Non-Coding RNA Search

Ss1.1-Pig3-SRG8019F21.3

Sequence:


               
               TTCGGGGACCAAGCAGCTTTTGGAGCAGGCTGCTCATCTGCCGCGCATGGGCGCCCAGTG
GGCCCTGGGGACACGGGTGGACGCGGCCAAAGTCTGCCAGCAGCAGGCGTGGGGGTCCAG
TGGCCCCACAGCCCCGTGGGGACATTAGCAGCAGGTTCTCATGCCGAAGTTCAGCCAGGG
CTGCACCCTGCGCCTCCAGGTGCTCCAGGGCCATGCTCAGCTGCAGCAGCAGCAGATCCA
CGGCCCTTGTGAACTTCATGGGCGGCTGTGTGCCCGCCTCCACCATCCACTGGGCCACCG
TGAGCTCTGGCACCTCCGTCGCCAGGGCCACGGGGCCCCTCCAGGGCATCTCGGGCAGTG
TACCCTCAGGCACCAGCCCACACAGCCCCTGGAGGTTGAAATGTGGGGCCAGCAAGGCCT
GCAGCTCCAGGCCCCATGGGTGGGGCTCCTCTGCTCCCGGCTTGGGCACCTTGGCAGCCA
GGATGTGCCACGCCTCCTCATCCGCGCGCACCATGCGGTAGTACAGGGCGTCCCCGCTCT
CCAAGCAGGGCGAGCTGTCCAAGAGGCGGAAGTCGTGGCCGGGGCGGCAGGGGCCGGGGC
GGCCCCCCAGGAGCCGGGCGTGCAGCCGGGCGTGCACGACACGCAGGCATTCCAGCTGCC
TGGCCTCCAGCGATGCGTGCACAGCCTCCGGGCGGTGCAGGTCGTGGAGGGAGAGGCCCA
GCTNTGCGTCCAGCGAGCAGAAGGGCAGCTCTGCAGGCGGACGGGCTGGCTCCACCCTCT
GGTCGCCTGCCCTGCTCTCGTCCACACTGAGGGATCCCAGAAGCGGCTTCCGATGCTGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCGGGGACCAAGCAGCTTTTGGAGCAGGCTGCTCATCTGCCGCGCATGGGCGCCCAGTG
GGCCCTGGGGACACGGGTGGACGCGGCCAAAGTCTGCCAGCAGCAGGCGTGGGGGTCCAG
TGGCCCCACAGCCCCGTGGGGACATTAGCAGCAGGTTCTCATGCCGAAGTTCAGCCAGGG
CTGCACCCTGCGCCTCCAGGTGCTCCAGGGCCATGCTCAGCTGCAGCAGCAGCAGATCCA
CGGCCCTTGTGAACTTCATGGGCGGCTGTGTGCCCGCCTCCACCATCCACTGGGCCACCG
TGAGCTCTGGCACCTCCGTCGCCAGGGCCACGGGGCCCCTCCAGGGCATCTCGGGCAGTG
TACCCTCAGGCACCAGCCCACACAGCCCCTGGAGGTTGAAATGTGGGGCCAGCAAGGCCT
GCAGCTCCAGGCCCCATGGGTGGGGCTCCTCTGCTCCCGGCTTGGGCACCTTGGCAGCCA
GGATGTGCCACGCCTCCTCATCCGCGCGCACCATGCGGTAGTACAGGGCGTCCCCGCTCT
CCAAGCAGGGCGAGCTGTCCAAGAGGCGGAAGTCGTGGCCGGGGCGGCAGGGGCCGGGGC
GGCCCCCCAGGAGCCGGGCGTGCAGCCGGGCGTGCACGACACGCAGGCATTCCAGCTGCC
TGGCCTCCAGCGATGCGTGCACAGCCTCCGGGCGGTGCAGGTCGTGGAGGGAGAGGCCCA
GCTNTGCGTCCAGCGAGCAGAAGGGCAGCTCTGCAGGCGGACGGGCTGGCTCCACCCTCT
GGTCGCCTGCCCTGCTCTCGTCCACACTGAGGGATCCCAGAAGCGGCTTCCGATGCTGCC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|38348368|ref|NP_940934.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|38348368|ref|NP_940934.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               156-435, - strand, RNAz p=0.935375

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               156-435, - strand, RNAz p=0.935375

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

Help | Less info


               
               6-471, gnl|bosTau2|chr7 (18059734-18059269)
               

               
               6-471, gnl|Hg17|chr19 (2227016-2227490)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-471, gnl|bosTau2|chr7 (18059734-18059269)
               

               
               6-471, gnl|Hg17|chr19 (2227016-2227490)

	6-471, gnl\|bosTau2\|chr7 (18059734-18059269)
	6-471, gnl\|Hg17\|chr19 (2227016-2227490)