Non-Coding RNA Search

Ss1.1-Pig3-SRG8019G07.3

Sequence:


               
               AGAAGCCTGGACTTACCCACTTCCAGGCAGCTTCTGGATCAGCTGCCTGGAAGATGTCAT
GGCATCCAAGGAGGTACCCTTTTCAATACATGGGCTTTCCTGGATGGCAAGTCTGTCACC
TTCTCTGGGGCAGAGGTACTTGGCACCCTTTCCGTTCGCCTGGGGAAAAGAACATGGCCT
ACACAGGTTATCCCACAGCTTACCCAGCTGCAGCCCCTGCCTACAATGTTCTTAGTGGTA
CCACCAGTAGCCCCAGTTATGCTCCAGAGTTTCAGTTCCTGCATTCAGCTTATGGTAGGA
GAGCTATTTTTCCTCATCTGTATTATGGCCGATGAATGTGTTATCTTGTAACAATAGTAG
ATCCCCTCTCCTTTCCTCCCAAATCCCATCCCCTAGGCTTGGGCTCCCCCAGGTGGCTCA
GCAGCAGTTCCTAAAGCATGCAGGAACATGTCTGATGGTGCAAAGTCATGGGTCGGAGAC
ACACATGAACCCTCCCTTAGGGCAGCAGTGAAGGATCACGGCACTAAAAGGCGTCTCTCC
CCTTCCTCACCTCCGGGGTCCCATCTGACCTAGGTCAGAAGCCTTCACCCTAACGTGGCT
GCTGAATTCAAACAAGTGAACAAAAATCCCTGGGCTTATCTGGCTCCTCTGTTGGCTTTA
CAGCAGCTCCTGTGGAGGAATACCTGGATTACGCCTATAAAAATGCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAAGCCTGGACTTACCCACTTCCAGGCAGCTTCTGGATCAGCTGCCTGGAAGATGTCAT
GGCATCCAAGGAGGTACCCTTTTCAATACATGGGCTTTCCTGGATGGCAAGTCTGTCACC
TTCTCTGGGGCAGAGGTACTTGGCACCCTTTCCGTTCGCCTGGGGAAAAGAACATGGCCT
ACACAGGTTATCCCACAGCTTACCCAGCTGCAGCCCCTGCCTACAATGTTCTTAGTGGTA
CCACCAGTAGCCCCAGTTATGCTCCAGAGTTTCAGTTCCTGCATTCAGCTTATGGTAGGA
GAGCTATTTTTCCTCATCTGTATTATGGCCGATGAATGTGTTATCTTGTAACAATAGTAG
ATCCCCTCTCCTTTCCTCCCAAATCCCATCCCCTAGGCTTGGGCTCCCCCAGGTGGCTCA
GCAGCAGTTCCTAAAGCATGCAGGAACATGTCTGATGGTGCAAAGTCATGGGTCGGAGAC
ACACATGAACCCTCCCTTAGGGCAGCAGTGAAGGATCACGGCACTAAAAGGCGTCTCTCC
CCTTCCTCACCTCCGGGGTCCCATCTGACCTAGGTCAGAAGCCTTCACCCTAACGTGGCT
GCTGAATTCAAACAAGTGAACAAAAATCCCTGGGCTTATCTGGCTCCTCTGTTGGCTTTA
CAGCAGCTCCTGTGGAGGAATACCTGGATTACGCCTATAAAAATGCAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               1-156, + strand, RNAz p=0.99186
               

               
               504-657, + strand, RNAz p=0.960115

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-156, + strand, RNAz p=0.99186
               

               
               504-657, + strand, RNAz p=0.960115

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               47-117, + strand, RNAmicro p=0.934377

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               47-117, + strand, RNAmicro p=0.934377

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-156, gnl|bosTau2|chr15 (41767465-41767311)
               

               
               1-156, gnl|Hg17|chr11 (72814013-72813866)
               

               
               1-156, gnl|Mm7|chr7 (96864714-96864863)
               


               
               229-708, gnl|bosTau2|chr15 (41767223-41766746)
               

               
               229-708, gnl|Hg17|chr11 (72813780-72813340)
               

               
               229-708, gnl|Mm7|chr7 (96864943-96865376)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-156, gnl|bosTau2|chr15 (41767465-41767311)
               

               
               1-156, gnl|Hg17|chr11 (72814013-72813866)
               

               
               1-156, gnl|Mm7|chr7 (96864714-96864863)
               


               
               229-708, gnl|bosTau2|chr15 (41767223-41766746)
               

               
               229-708, gnl|Hg17|chr11 (72813780-72813340)
               

               
               229-708, gnl|Mm7|chr7 (96864943-96865376)

	1-156, + strand, RNAz p=0.99186
	504-657, + strand, RNAz p=0.960115

	1-156, gnl\|bosTau2\|chr15 (41767465-41767311)
	1-156, gnl\|Hg17\|chr11 (72814013-72813866)
	1-156, gnl\|Mm7\|chr7 (96864714-96864863)

	229-708, gnl\|bosTau2\|chr15 (41767223-41766746)
	229-708, gnl\|Hg17\|chr11 (72813780-72813340)
	229-708, gnl\|Mm7\|chr7 (96864943-96865376)