Non-Coding RNA Search

Ss1.1-Pig3-SRG8019I05.3

Sequence:


               
               CTTCTCTCTGATTGGCCTGCCGCCAACTCCGCTCCAGCTCCCAGGCGAGCACCCCCTGTG
GATGCAGAGATTCTGCGCACCATGAAGAAAGTGGGCTTCATTGGCTATGCGCCCAACCCT
CGCACAAGGCTACGCAATCAGATTCCATACCGACTCAAGGAGTCTGACAGTGAATTTGAC
AGCTGCAGCCAGGTCACTGAGTCACCGATAGGGCGAGAAGAGGAGCCACATCTCCACATG
GTCTCTAAGAAATACCGCAAGGTGACCATCAAATACTCCAAGCTAGGGCTGGAGGACTTT
GACTTCAAACACTACAATAAGACGCTGTTTGCCGGATTAGAGCCCCACATCCCCAATGCC
TACTGTAACTGCATGATCCAGGTGCTCTATTTCTTGGAGCCTGTTCGCTGTGTAATCCAT
AACCACCTTTGCCAGAAAGAGTTCTGCCTGGCATGTGAGCTGGGCTTCATCTTTCACATG
TTGGACCTCTCCCGAGGTGACCCTTGTCAGGGCAGTAATTTTCTCCGGGCGTTCCGCACC
ATTCATGAGGCTTCAGCCCTTGGTCTGATTTTGGCTGACTCGGATGAGGCTTCAGGCAAG
GGCAACCTGGCCAGGCTCATTCAGAGGTGGAATCGCTTCATTCTCACTCAGCTGCATCAA
GATTTGCAGGAGCTGGAAGTACCCCAGGCTTATCGAGGTGCTGGAGGCAGCTTTTGCTCA
TCGGGGGACTCTGTCATTGGGCAGCTGTTCAGCTGTGAGATGGAAAACTGCAGCCTCTGC
CGCTGTGGCAGTGAGACCGTGCGAGCATCATCCACCCTGCTCTTCACGCTCTCCTACCCT
GAGGATAAAACCGGGAAGAACTGTGACTTTGCTCAGGTGCTGAAGCGAAGCATCTGTCTG
GAGCAGAATACACAGGCCTGGTGTGACAACTGTGAAAAGTACCAGCCCACGATTCAGACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTCTCTCTGATTGGCCTGCCGCCAACTCCGCTCCAGCTCCCAGGCGAGCACCCCCTGTG
GATGCAGAGATTCTGCGCACCATGAAGAAAGTGGGCTTCATTGGCTATGCGCCCAACCCT
CGCACAAGGCTACGCAATCAGATTCCATACCGACTCAAGGAGTCTGACAGTGAATTTGAC
AGCTGCAGCCAGGTCACTGAGTCACCGATAGGGCGAGAAGAGGAGCCACATCTCCACATG
GTCTCTAAGAAATACCGCAAGGTGACCATCAAATACTCCAAGCTAGGGCTGGAGGACTTT
GACTTCAAACACTACAATAAGACGCTGTTTGCCGGATTAGAGCCCCACATCCCCAATGCC
TACTGTAACTGCATGATCCAGGTGCTCTATTTCTTGGAGCCTGTTCGCTGTGTAATCCAT
AACCACCTTTGCCAGAAAGAGTTCTGCCTGGCATGTGAGCTGGGCTTCATCTTTCACATG
TTGGACCTCTCCCGAGGTGACCCTTGTCAGGGCAGTAATTTTCTCCGGGCGTTCCGCACC
ATTCATGAGGCTTCAGCCCTTGGTCTGATTTTGGCTGACTCGGATGAGGCTTCAGGCAAG
GGCAACCTGGCCAGGCTCATTCAGAGGTGGAATCGCTTCATTCTCACTCAGCTGCATCAA
GATTTGCAGGAGCTGGAAGTACCCCAGGCTTATCGAGGTGCTGGAGGCAGCTTTTGCTCA
TCGGGGGACTCTGTCATTGGGCAGCTGTTCAGCTGTGAGATGGAAAACTGCAGCCTCTGC
CGCTGTGGCAGTGAGACCGTGCGAGCATCATCCACCCTGCTCTTCACGCTCTCCTACCCT
GAGGATAAAACCGGGAAGAACTGTGACTTTGCTCAGGTGCTGAAGCGAAGCATCTGTCTG
GAGCAGAATACACAGGCCTGGTGTGACAACTGTGAAAAGTACCAGCCCACGATTCAGACC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               508-666, - strand, RNAz p=0.758518

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               508-666, - strand, RNAz p=0.758518

Aligned organism(s): 21 entry(ies)

More info

Aligned organism(s): 21 entry(ies)

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               260-383, gnl|bosTau2|chr5 (33317033-33317156)
               

               
               260-383, gnl|Hg17|chr12 (55005181-55005058)
               

               
               260-383, gnl|Mm7|chr10 (127814636-127814759)
               


               
               508-710, gnl|bosTau2|chr5 (33317683-33317885)
               

               
               508-710, gnl|canFam2|chr10 (3609768-3609985)
               

               
               508-710, gnl|danRer3|chr23 (45389908-45389698)
               

               
               508-710, gnl|dasNov1|scaffold_48367 (100-317)
               

               
               508-710, gnl|echTel1|scaffold_297832 (4786-4572)
               

               
               508-710, gnl|fr1|chrUn (230156112-230156319)
               

               
               508-710, gnl|galGal2|chrUn (48290380-48290162)
               

               
               508-710, gnl|hg17|chr12 (55004343-55004552)
               

               
               508-710, gnl|Hg17|chr12 (55004547-55004345)
               

               
               508-710, gnl|loxAfr1|scaffold_1805 (1156-939)
               

               
               508-710, gnl|mm7|chr10 (127815542-127815333)
               

               
               508-710, gnl|Mm7|chr10 (127815336-127815538)
               

               
               508-710, gnl|oryCun1|scaffold_186802 (22678-22469)
               

               
               508-710, gnl|panTro1|chr10 (56256189-56256398)
               

               
               508-710, gnl|rheMac2|chr11 (53400212-53400421)
               

               
               508-710, gnl|rn3|chr7 (1602852-1602643)
               

               
               508-710, gnl|tetNig1|chr9 (8612517-8612724)
               

               
               508-710, gnl|xenTro1|scaffold_85 (1731654-1731860)

Aligned organism(s): 21 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               260-383, gnl|bosTau2|chr5 (33317033-33317156)
               

               
               260-383, gnl|Hg17|chr12 (55005181-55005058)
               

               
               260-383, gnl|Mm7|chr10 (127814636-127814759)
               


               
               508-710, gnl|bosTau2|chr5 (33317683-33317885)
               

               
               508-710, gnl|canFam2|chr10 (3609768-3609985)
               

               
               508-710, gnl|danRer3|chr23 (45389908-45389698)
               

               
               508-710, gnl|dasNov1|scaffold_48367 (100-317)
               

               
               508-710, gnl|echTel1|scaffold_297832 (4786-4572)
               

               
               508-710, gnl|fr1|chrUn (230156112-230156319)
               

               
               508-710, gnl|galGal2|chrUn (48290380-48290162)
               

               
               508-710, gnl|hg17|chr12 (55004343-55004552)
               

               
               508-710, gnl|Hg17|chr12 (55004547-55004345)
               

               
               508-710, gnl|loxAfr1|scaffold_1805 (1156-939)
               

               
               508-710, gnl|mm7|chr10 (127815542-127815333)
               

               
               508-710, gnl|Mm7|chr10 (127815336-127815538)
               

               
               508-710, gnl|oryCun1|scaffold_186802 (22678-22469)
               

               
               508-710, gnl|panTro1|chr10 (56256189-56256398)
               

               
               508-710, gnl|rheMac2|chr11 (53400212-53400421)
               

               
               508-710, gnl|rn3|chr7 (1602852-1602643)
               

               
               508-710, gnl|tetNig1|chr9 (8612517-8612724)
               

               
               508-710, gnl|xenTro1|scaffold_85 (1731654-1731860)

	260-383, gnl\|bosTau2\|chr5 (33317033-33317156)
	260-383, gnl\|Hg17\|chr12 (55005181-55005058)
	260-383, gnl\|Mm7\|chr10 (127814636-127814759)

	508-710, gnl\|bosTau2\|chr5 (33317683-33317885)
	508-710, gnl\|canFam2\|chr10 (3609768-3609985)
	508-710, gnl\|danRer3\|chr23 (45389908-45389698)
	508-710, gnl\|dasNov1\|scaffold_48367 (100-317)
	508-710, gnl\|echTel1\|scaffold_297832 (4786-4572)
	508-710, gnl\|fr1\|chrUn (230156112-230156319)
	508-710, gnl\|galGal2\|chrUn (48290380-48290162)
	508-710, gnl\|hg17\|chr12 (55004343-55004552)
	508-710, gnl\|Hg17\|chr12 (55004547-55004345)
	508-710, gnl\|loxAfr1\|scaffold_1805 (1156-939)
	508-710, gnl\|mm7\|chr10 (127815542-127815333)
	508-710, gnl\|Mm7\|chr10 (127815336-127815538)
	508-710, gnl\|oryCun1\|scaffold_186802 (22678-22469)
	508-710, gnl\|panTro1\|chr10 (56256189-56256398)
	508-710, gnl\|rheMac2\|chr11 (53400212-53400421)
	508-710, gnl\|rn3\|chr7 (1602852-1602643)
	508-710, gnl\|tetNig1\|chr9 (8612517-8612724)
	508-710, gnl\|xenTro1\|scaffold_85 (1731654-1731860)