Non-Coding RNA Search

Ss1.1-Pig3-SRG8019J10.3

Sequence:


               
               ATTTTGGTCAACAGTTTCCAGCTCCTGTACGTGGTAGATGCTCTCTGGAATGAGGAAGCA
TTATTGACAACCATGGACATTATCCATGATGGATTTGGATTCATGCTGGCTTTTGGAGAT
TTGGTGTGGGTTCCATTTATCTACAGCTTTCAAGCCTTTTATTTAGTCAGTCATCCAAAT
GAACTGTCTTGGCCAATGGCTTCTCTAATCATTGCTCTGAAACTATGCGGATTTGTAATC
TTCCGATGTGCAAATTCTCAGAAAAATGCATTCCGGAAAAACCCCGCTGATCCAAGGCTT
GCACATTTAAAAACCATTCATACTTCAACGGGAAAAAATCTTCTTGTTTCTGGATGGTGG
GGTTTTGTTCGCCACCCCAATTACTTGGGTGATCTCATCATGGCCCTGGCGTGGTCCCTC
CCATGCGGTTTCAATCACATTCTGCCGTATTTCTACGTGATTTATTTCACCATCTTGCTG
GTGCACCGGGAAGCCCGCGACGAGCACCACTGTAGGAAGAAGTATGGCCTGGCGTGGGAG
AAGTACTGCCAGCGAGTCCCCTACCGCATAGTCCCCTACATCTACTGATTCTGCTCTGGG
CGCCCTCTAAATGCTCCTGCAGTTCTATCTTCCGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTTTGGTCAACAGTTTCCAGCTCCTGTACGTGGTAGATGCTCTCTGGAATGAGGAAGCA
TTATTGACAACCATGGACATTATCCATGATGGATTTGGATTCATGCTGGCTTTTGGAGAT
TTGGTGTGGGTTCCATTTATCTACAGCTTTCAAGCCTTTTATTTAGTCAGTCATCCAAAT
GAACTGTCTTGGCCAATGGCTTCTCTAATCATTGCTCTGAAACTATGCGGATTTGTAATC
TTCCGATGTGCAAATTCTCAGAAAAATGCATTCCGGAAAAACCCCGCTGATCCAAGGCTT
GCACATTTAAAAACCATTCATACTTCAACGGGAAAAAATCTTCTTGTTTCTGGATGGTGG
GGTTTTGTTCGCCACCCCAATTACTTGGGTGATCTCATCATGGCCCTGGCGTGGTCCCTC
CCATGCGGTTTCAATCACATTCTGCCGTATTTCTACGTGATTTATTTCACCATCTTGCTG
GTGCACCGGGAAGCCCGCGACGAGCACCACTGTAGGAAGAAGTATGGCCTGGCGTGGGAG
AAGTACTGCCAGCGAGTCCCCTACCGCATAGTCCCCTACATCTACTGATTCTGCTCTGGG
CGCCCTCTAAATGCTCCTGCAGTTCTATCTTCCGTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61817847|ref|XP_597675.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61817847|ref|XP_597675.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               89-223, + strand, RNAz p=0.765217

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               89-223, + strand, RNAz p=0.765217

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               50-223, gnl|bosTau2|chr16 (16888785-16888958)
               

               
               50-223, gnl|Hg17|chr1 (221901275-221901101)
               

               
               50-223, gnl|Mm7|chr1 (181803008-181802835)
               


               
               427-636, gnl|bosTau2|chr16 (16892206-16892415)
               

               
               427-636, gnl|Hg17|chr1 (221897901-221897691)
               

               
               427-636, gnl|Mm7|chr1 (181801014-181800821)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               50-223, gnl|bosTau2|chr16 (16888785-16888958)
               

               
               50-223, gnl|Hg17|chr1 (221901275-221901101)
               

               
               50-223, gnl|Mm7|chr1 (181803008-181802835)
               


               
               427-636, gnl|bosTau2|chr16 (16892206-16892415)
               

               
               427-636, gnl|Hg17|chr1 (221897901-221897691)
               

               
               427-636, gnl|Mm7|chr1 (181801014-181800821)

	50-223, gnl\|bosTau2\|chr16 (16888785-16888958)
	50-223, gnl\|Hg17\|chr1 (221901275-221901101)
	50-223, gnl\|Mm7\|chr1 (181803008-181802835)

	427-636, gnl\|bosTau2\|chr16 (16892206-16892415)
	427-636, gnl\|Hg17\|chr1 (221897901-221897691)
	427-636, gnl\|Mm7\|chr1 (181801014-181800821)