Non-Coding RNA Search

Ss1.1-Pig3-SRG8019L03.5

Sequence:


               
               GCGGCCGCTCGGCGCGCGACCGGGCAGGGCCGGCGCCTCGTCAGCCTTCTTCGCCGCGTA
GCCCGGGCCCCAGGGGATGCCCCCGGCCGGGTCCCCCCATGGCCGCCGAAGTCTTCCTGT
GCTCCCCGCGCCGGCCTCACAGCCGGGGCCGTGCGGTGCTGCTCAAGCCCCAGGTGCCGG
AGGACGACGACGACTCGGACACAGATGAGCCGTCCCCACCGCCCGCCTCCGGCGCGGCCA
CTCTGGCCCGGGGCCACGCGAGCGCCGGGCCACCGCAGCCCAGGGCCGGGTCGGGCCGCG
AGGAGCCTCCGCGCCGGCAGCAAATCATCCACAGCGGCCACTTCATGGTGTCGTCGCCGC
ATCGAGAGCACCCGCCCAAGAAGGGCTATGATTTCGACACGGTCAACAAGCAGACGTGCC
AGACCTACAGCTTCGGCAAGACCAGCTCCTGCCACCTGTCCATCGACGCCTCACTCACCA
AGCTCTTTGAGTGCATGACCCTGGCCTACAGTGGCAAGTTGGTGTCTCCAAAGTGGAAGA
ATTTCAAGGGCCTGAAGCTCCAGTGGAGAGACAAGATCCGGCTCAACAACGCCATCTGGC
GGGCATGGTACATGAGTATTTGGAAAAGCGCAGAATCCCGTGTGTCACTTTGTCACTCCG
CTGGATGGCTCTGTGGAAGTGGATGAGCACGCGGCCAGAGGCTATCACCACCGAGGGGAA
AAGTACTGGAAGAGCCGCATTGAGATCGTGATCCGAGAGTATCACAAGTGGAGAACCTAC
TTCAAGAAAAGGCTCCAGCAGCACAAGGATGATGACCTCTCCAGCCTGGCCCAAGACGAT
GACATGCTGTATTGGCATAAGCATGGGGATGGCTGGAAGACCCCTGTCCCCATGGAGGAG
GACACACTGCTGGACACGGACATGCTCATGTCGGAATTCAGCGACACCCTCTTCTCCACG
CTTTCCTCCCACCCGCCTGTGGCTTGGCCCAACCCACGTGAAATAGCACATCTGGGAAAT
GCAGACATGATTCAGCCGGGGCTGATGCCCTTGCAACCCAACCTGGACTTCATGGACACT
TTTGAGCCTTTCCAGGACCTCTTATCTTCCAGCCGCTCCATTTTTGGCTCCATGCTGCCT
GCACCCGCCTCAGCAGATGCGCCAGACCCCAACAGCCCTGCCCCGGCACCCGTGTCTCCT
GCCTTGCACTTAGGTCCTCCTCCTGCCACTGCCATGAGTCCCCCAACTCCACCCGCCTTC
CTGCAGCCACAGAAGTTTGCCGAAGTCAGCAAATCACCCTCTGTCATCACCCATACGGCC
TCCGCCACCCTCACCCATGATGCCTCTGCCACCACCTTCAGCCAGAGCCAGGGACTCATT
ATCACAACCCGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGCCGCTCGGCGCGCGACCGGGCAGGGCCGGCGCCTCGTCAGCCTTCTTCGCCGCGTA
GCCCGGGCCCCAGGGGATGCCCCCGGCCGGGTCCCCCCATGGCCGCCGAAGTCTTCCTGT
GCTCCCCGCGCCGGCCTCACAGCCGGGGCCGTGCGGTGCTGCTCAAGCCCCAGGTGCCGG
AGGACGACGACGACTCGGACACAGATGAGCCGTCCCCACCGCCCGCCTCCGGCGCGGCCA
CTCTGGCCCGGGGCCACGCGAGCGCCGGGCCACCGCAGCCCAGGGCCGGGTCGGGCCGCG
AGGAGCCTCCGCGCCGGCAGCAAATCATCCACAGCGGCCACTTCATGGTGTCGTCGCCGC
ATCGAGAGCACCCGCCCAAGAAGGGCTATGATTTCGACACGGTCAACAAGCAGACGTGCC
AGACCTACAGCTTCGGCAAGACCAGCTCCTGCCACCTGTCCATCGACGCCTCACTCACCA
AGCTCTTTGAGTGCATGACCCTGGCCTACAGTGGCAAGTTGGTGTCTCCAAAGTGGAAGA
ATTTCAAGGGCCTGAAGCTCCAGTGGAGAGACAAGATCCGGCTCAACAACGCCATCTGGC
GGGCATGGTACATGAGTATTTGGAAAAGCGCAGAATCCCGTGTGTCACTTTGTCACTCCG
CTGGATGGCTCTGTGGAAGTGGATGAGCACGCGGCCAGAGGCTATCACCACCGAGGGGAA
AAGTACTGGAAGAGCCGCATTGAGATCGTGATCCGAGAGTATCACAAGTGGAGAACCTAC
TTCAAGAAAAGGCTCCAGCAGCACAAGGATGATGACCTCTCCAGCCTGGCCCAAGACGAT
GACATGCTGTATTGGCATAAGCATGGGGATGGCTGGAAGACCCCTGTCCCCATGGAGGAG
GACACACTGCTGGACACGGACATGCTCATGTCGGAATTCAGCGACACCCTCTTCTCCACG
CTTTCCTCCCACCCGCCTGTGGCTTGGCCCAACCCACGTGAAATAGCACATCTGGGAAAT
GCAGACATGATTCAGCCGGGGCTGATGCCCTTGCAACCCAACCTGGACTTCATGGACACT
TTTGAGCCTTTCCAGGACCTCTTATCTTCCAGCCGCTCCATTTTTGGCTCCATGCTGCCT
GCACCCGCCTCAGCAGATGCGCCAGACCCCAACAGCCCTGCCCCGGCACCCGTGTCTCCT
GCCTTGCACTTAGGTCCTCCTCCTGCCACTGCCATGAGTCCCCCAACTCCACCCGCCTTC
CTGCAGCCACAGAAGTTTGCCGAAGTCAGCAAATCACCCTCTGTCATCACCCATACGGCC
TCCGCCACCCTCACCCATGATGCCTCTGCCACCACCTTCAGCCAGAGCCAGGGACTCATT
ATCACAACCCGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q8C8C6_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8C8C6_MOUSE

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               835-1006, - strand, RNAz p=0.737365
               

               
               1212-1331, - strand, RNAz p=0.86804

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               835-1006, - strand, RNAz p=0.737365
               

               
               1212-1331, - strand, RNAz p=0.86804

Aligned organism(s): 8 entry(ies)

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Aligned organism(s): 8 entry(ies)

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               175-511, gnl|bosTau2|chr17 (29195136-29194800)
               

               
               175-511, gnl|Mm7|chr5 (122639581-122639917)
               


               
               835-1006, gnl|bosTau2|chr17 (29149514-29149343)
               

               
               835-1006, gnl|Hg17|chr12 (121139368-121139539)
               

               
               835-1006, gnl|Mm7|chr5 (122687609-122687780)
               


               
               1173-1392, gnl|bosTau2|chr17 (29146439-29146220)
               

               
               1173-1392, gnl|Hg17|chr12 (121142999-121143218)
               

               
               1173-1392, gnl|Mm7|chr5 (122690271-122690490)

Aligned organism(s): 8 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               175-511, gnl|bosTau2|chr17 (29195136-29194800)
               

               
               175-511, gnl|Mm7|chr5 (122639581-122639917)
               


               
               835-1006, gnl|bosTau2|chr17 (29149514-29149343)
               

               
               835-1006, gnl|Hg17|chr12 (121139368-121139539)
               

               
               835-1006, gnl|Mm7|chr5 (122687609-122687780)
               


               
               1173-1392, gnl|bosTau2|chr17 (29146439-29146220)
               

               
               1173-1392, gnl|Hg17|chr12 (121142999-121143218)
               

               
               1173-1392, gnl|Mm7|chr5 (122690271-122690490)

	835-1006, - strand, RNAz p=0.737365
	1212-1331, - strand, RNAz p=0.86804

	175-511, gnl\|bosTau2\|chr17 (29195136-29194800)
	175-511, gnl\|Mm7\|chr5 (122639581-122639917)

	835-1006, gnl\|bosTau2\|chr17 (29149514-29149343)
	835-1006, gnl\|Hg17\|chr12 (121139368-121139539)
	835-1006, gnl\|Mm7\|chr5 (122687609-122687780)

	1173-1392, gnl\|bosTau2\|chr17 (29146439-29146220)
	1173-1392, gnl\|Hg17\|chr12 (121142999-121143218)
	1173-1392, gnl\|Mm7\|chr5 (122690271-122690490)