Non-Coding RNA Search

Ss1.1-Pig3-SRG8020A01.3

Sequence:


               
               CCAACAAGCGCATGGTGGAGTATGAAGAGGCCCAGGCGTATGCAGATGACAACACCTTAT
TGTTTATGGAGACTTCAGCCAAGACAGCTATGAACGTGAACGATCTCTTCCTGGCAATAG
CTAAGAAGTTGCCAAAGAGTGAACCCCAGAATCTGGGGGGTGCAGCAGGCCGAAGCCGGG
GTGTGGATCTCCATGAGCAGTCCCAGCAGAACAAGAGCCAGTGTTGTAGCAACTGAGGGG
TGGCTAGCAGCAAACAAGTATGAAGCTAGCACGAGAGCTAAGAAATAACCTCCATCCCCA
CCCCTCAGCACACAGCCCCTACGGTAACAGCACACTGAGCCCTGGCTCCCAAGGGCTGCC
TCCTGACAGCTCCGTCATGGCACTTTTTAACGCTTCAGCAACAACACCAGGCAGCTGTTG
CCACTGGCCTCCTACCCCTACTCTGGGGCCTGGAGGTCAGATCCCCCAGGACTTACCTTC
CAAACAAACTTTCTCCACTTTGTATTATAGGTGCAAGACAGTGACCTACTTACCTTTCCT
CCTTTTCTTCCCCATTTTTTTCAAAAAACGTTGTCTCCTGCCCCTTTCCCTTCAGCTTTT
GGTCAGTCTCTGTTCTTGATCCCCTTTTCCTCCTCTCCCCAGGGTGGAGAAGGTGGTGAA
CCCAGGAACTAAGAAGGAAGGAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCAACAAGCGCATGGTGGAGTATGAAGAGGCCCAGGCGTATGCAGATGACAACACCTTAT
TGTTTATGGAGACTTCAGCCAAGACAGCTATGAACGTGAACGATCTCTTCCTGGCAATAG
CTAAGAAGTTGCCAAAGAGTGAACCCCAGAATCTGGGGGGTGCAGCAGGCCGAAGCCGGG
GTGTGGATCTCCATGAGCAGTCCCAGCAGAACAAGAGCCAGTGTTGTAGCAACTGAGGGG
TGGCTAGCAGCAAACAAGTATGAAGCTAGCACGAGAGCTAAGAAATAACCTCCATCCCCA
CCCCTCAGCACACAGCCCCTACGGTAACAGCACACTGAGCCCTGGCTCCCAAGGGCTGCC
TCCTGACAGCTCCGTCATGGCACTTTTTAACGCTTCAGCAACAACACCAGGCAGCTGTTG
CCACTGGCCTCCTACCCCTACTCTGGGGCCTGGAGGTCAGATCCCCCAGGACTTACCTTC
CAAACAAACTTTCTCCACTTTGTATTATAGGTGCAAGACAGTGACCTACTTACCTTTCCT
CCTTTTCTTCCCCATTTTTTTCAAAAAACGTTGTCTCCTGCCCCTTTCCCTTCAGCTTTT
GGTCAGTCTCTGTTCTTGATCCCCTTTTCCTCCTCTCCCCAGGGTGGAGAAGGTGGTGAA
CCCAGGAACTAAGAAGGAAGGAGG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               197-677, - strand, RNAz p=0.995285

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               197-677, - strand, RNAz p=0.995285

Similar Transcript(s): 6 entry(ies)

More info

Similar Transcript(s): 6 entry(ies)

Help | Less info


               
               197-528, 596572 MARC 6BOV Bos taurus cDNA 5', mRNA sequence (gb|CB423356.1|), 
blast E-value=0, identity=97.6% 
               

               
               197-528, 776787 MARC 6BOV Bos taurus cDNA 3', mRNA sequence (gb|CB538765.1|), 
blast E-value=0, identity=96.71% 
               

               
               197-641, LB02616.CR_K02 GC_BGC-26 Bos taurus cDNA clone IMAGE (gb|DV881151.1|), 
blast E-value=1e-20, identity=94.37% 
               

               
               197-530, LB02630.CR_E15 GC_BGC-26 Bos taurus cDNA clone IMAGE (gb|DV884332.1|), 
blast E-value=0, identity=97.62% 
               

               
               197-543, LB03012.CR_O08 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb|DV928222.1|), 
blast E-value=0, identity=96.84% 
               

               
               197-670, 001206BFMA005202HT BFMA Bos taurus cDNA, mRNA sequence 
(gb|DY097552.1|), blast E-value=3e-33, identity=94%

Similar Transcript(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               197-528, 596572 MARC 6BOV Bos taurus cDNA 5', mRNA sequence (gb|CB423356.1|), 
blast E-value=0, identity=97.6% 
               

               
               197-528, 776787 MARC 6BOV Bos taurus cDNA 3', mRNA sequence (gb|CB538765.1|), 
blast E-value=0, identity=96.71% 
               

               
               197-641, LB02616.CR_K02 GC_BGC-26 Bos taurus cDNA clone IMAGE (gb|DV881151.1|), 
blast E-value=1e-20, identity=94.37% 
               

               
               197-530, LB02630.CR_E15 GC_BGC-26 Bos taurus cDNA clone IMAGE (gb|DV884332.1|), 
blast E-value=0, identity=97.62% 
               

               
               197-543, LB03012.CR_O08 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb|DV928222.1|), 
blast E-value=0, identity=96.84% 
               

               
               197-670, 001206BFMA005202HT BFMA Bos taurus cDNA, mRNA sequence 
(gb|DY097552.1|), blast E-value=3e-33, identity=94%

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               118-677, gnl|bosTau2|chr5 (33619523-33618951)
               

               
               118-677, gnl|Hg17|chr12 (54672145-54672724)
               

               
               118-677, gnl|Mm7|chr10 (128181416-128180854)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               118-677, gnl|bosTau2|chr5 (33619523-33618951)
               

               
               118-677, gnl|Hg17|chr12 (54672145-54672724)
               

               
               118-677, gnl|Mm7|chr10 (128181416-128180854)

	197-528, 596572 MARC 6BOV Bos taurus cDNA 5', mRNA sequence (gb\|CB423356.1\|), blast E-value=0, identity=97.6%
	197-528, 776787 MARC 6BOV Bos taurus cDNA 3', mRNA sequence (gb\|CB538765.1\|), blast E-value=0, identity=96.71%
	197-641, LB02616.CR_K02 GC_BGC-26 Bos taurus cDNA clone IMAGE (gb\|DV881151.1\|), blast E-value=1e-20, identity=94.37%
	197-530, LB02630.CR_E15 GC_BGC-26 Bos taurus cDNA clone IMAGE (gb\|DV884332.1\|), blast E-value=0, identity=97.62%
	197-543, LB03012.CR_O08 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb\|DV928222.1\|), blast E-value=0, identity=96.84%
	197-670, 001206BFMA005202HT BFMA Bos taurus cDNA, mRNA sequence (gb\|DY097552.1\|), blast E-value=3e-33, identity=94%

	118-677, gnl\|bosTau2\|chr5 (33619523-33618951)
	118-677, gnl\|Hg17\|chr12 (54672145-54672724)
	118-677, gnl\|Mm7\|chr10 (128181416-128180854)