Non-Coding RNA Search

Ss1.1-Pig3-SRG8020B09.5

Sequence:


               
               TGGNCCCTGAAAAGCCGAAAAAAAAAAAAAAAAAGAAGAAGAAGGTCTTTGGCCATTTTG
CTGTATGTCTTACAGCCTTGTTATCCCTTATTTCCTTCATTACAGCCTTCTTGGGTGTTT
AGTTGATTTTTTTTGTAGTGACACATTTGGATTTCCTCCTGTGTATATTCTTTAAATATT
TTCCCTGTGGTTACAGTGAAGATTGTGTCTTTTTCTCGTTGCTTAAGTCTTTAAACATCG
TCTTTGCTATTTTATGAGCATGTGGGAAGTTTTTAATATTAAAGGATATTGTAGCTCACT
GGTAGACACACTGGCCCAGCTTAAAAGTGGAGAAGCTTTGAGAAGAGATTTTAGATTTCT
CCCCTTAAACTCCTGGTAGTTCAGATGAACAAATCCTCATAGGAATACTCATTGGTTCTG
CTGCCTTTATATCTCCTTTAAGAGTACAGATGACTTCTCAGTACTTCCTAATAATTATTT
TGTTGATTTTGCTTATTTTATGTGCAGATCATAGGATATTAGCTTTGACAAAAAACTACT
TTCACACCATCATATTTTTGTCCTGATTTTGAATGTCCTTTAATGTTCAGCTACAATTGG
GCAGGACTGATTAGCCTCTTTAATGGCTCACTTTCCTCACAGTCATCTCCTATGTGAAGA
AAAATTACCATGTAACGACTCACCCAGACTTCCTGAATATAGTTGCATGTGTGTAATGAC
CTCACATATATTTTTTTTAAAAAAGTGGTGTCTCTTGGAATTTCCTGGTGGCTCAGCAGA
TGAAGGATCTGGCATTGTACTGCTGTGGTGCAAATCCAATCCCTGGCCCAGGAATTTCTG
AATGCTGCGAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGNCCCTGAAAAGCCGAAAAAAAAAAAAAAAAAGAAGAAGAAGGTCTTTGGCCATTTTG
CTGTATGTCTTACAGCCTTGTTATCCCTTATTTCCTTCATTACAGCCTTCTTGGGTGTTT
AGTTGATTTTTTTTGTAGTGACACATTTGGATTTCCTCCTGTGTATATTCTTTAAATATT
TTCCCTGTGGTTACAGTGAAGATTGTGTCTTTTTCTCGTTGCTTAAGTCTTTAAACATCG
TCTTTGCTATTTTATGAGCATGTGGGAAGTTTTTAATATTAAAGGATATTGTAGCTCACT
GGTAGACACACTGGCCCAGCTTAAAAGTGGAGAAGCTTTGAGAAGAGATTTTAGATTTCT
CCCCTTAAACTCCTGGTAGTTCAGATGAACAAATCCTCATAGGAATACTCATTGGTTCTG
CTGCCTTTATATCTCCTTTAAGAGTACAGATGACTTCTCAGTACTTCCTAATAATTATTT
TGTTGATTTTGCTTATTTTATGTGCAGATCATAGGATATTAGCTTTGACAAAAAACTACT
TTCACACCATCATATTTTTGTCCTGATTTTGAATGTCCTTTAATGTTCAGCTACAATTGG
GCAGGACTGATTAGCCTCTTTAATGGCTCACTTTCCTCACAGTCATCTCCTATGTGAAGA
AAAATTACCATGTAACGACTCACCCAGACTTCCTGAATATAGTTGCATGTGTGTAATGAC
CTCACATATATTTTTTTTAAAAAAGTGGTGTCTCTTGGAATTTCCTGGTGGCTCAGCAGA
TGAAGGATCTGGCATTGTACTGCTGTGGTGCAAATCCAATCCCTGGCCCAGGAATTTCTG
AATGCTGCGAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               252-369, + strand, RNAz p=0.561592

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               252-369, + strand, RNAz p=0.561592

Aligned organism(s): 8 entry(ies)

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Aligned organism(s): 8 entry(ies)

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               164-369, gnl|bosTau2|chr18 (15848920-15848715)
               

               
               164-369, gnl|canFam2|chr2 (70708922-70708788)
               

               
               164-369, gnl|hg17|chr16 (45686416-45686584)
               

               
               164-369, gnl|Hg17|chr16 (45686625-45686430)
               

               
               164-369, gnl|loxAfr1|scaffold_71754 (11525-11674)
               

               
               164-369, gnl|rheMac2|chr20 (45306662-45306830)
               


               
               451-756, gnl|bosTau2|chr18 (15848437-15848140)
               

               
               451-756, gnl|Hg17|chr16 (45685669-45685371)

Aligned organism(s): 8 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               164-369, gnl|bosTau2|chr18 (15848920-15848715)
               

               
               164-369, gnl|canFam2|chr2 (70708922-70708788)
               

               
               164-369, gnl|hg17|chr16 (45686416-45686584)
               

               
               164-369, gnl|Hg17|chr16 (45686625-45686430)
               

               
               164-369, gnl|loxAfr1|scaffold_71754 (11525-11674)
               

               
               164-369, gnl|rheMac2|chr20 (45306662-45306830)
               


               
               451-756, gnl|bosTau2|chr18 (15848437-15848140)
               

               
               451-756, gnl|Hg17|chr16 (45685669-45685371)

	164-369, gnl\|bosTau2\|chr18 (15848920-15848715)
	164-369, gnl\|canFam2\|chr2 (70708922-70708788)
	164-369, gnl\|hg17\|chr16 (45686416-45686584)
	164-369, gnl\|Hg17\|chr16 (45686625-45686430)
	164-369, gnl\|loxAfr1\|scaffold_71754 (11525-11674)
	164-369, gnl\|rheMac2\|chr20 (45306662-45306830)

	451-756, gnl\|bosTau2\|chr18 (15848437-15848140)
	451-756, gnl\|Hg17\|chr16 (45685669-45685371)