Non-Coding RNA Search

Ss1.1-Pig3-SRG8020D13.5

Sequence:


               
               AAAAAACTACCTTCTGCAGGGGAGGGTGCTCATGATGTGGCATTGGCCAAGCGTTCCCGC
AGTCGCACAGCCACGGAATGTGACGTCCGTATGAGCAAGTCCAAATCGGACAATCAGATC
AGTGACAGAGCTGCCCTGGAAGCCAAAGTGAAGGATCTCCTCACGTTGGGGGGGACCAAG
GATGTGGAGATTTTCCATTTGAGGAGTGAGCTCCGGGACATGCGTGCTCAGCTGGGCATC
AGTGAGGACCACTCCGAGGGAGGTGAGAGGACTGAGGAGAAGGAAGCTGCCACTGCTCAC
CAGCCAACCGACGTTGAGTCCACTTTGTTGCAGTTACAGGAGCAGAATGCCGCTATCCGT
GAGGAGCTCAACCAGCTGAAAAATGAAAACAGGATGCTCAAGGACAGGTTGAACGCACTG
GGCTTCTCCCTGGAGCAGAGGTTGGACCATTCTGAAAAGCTGTTTGGCTACCAGTCCTTG
AGTCCTGAAATCACCCCCGGCAACCAGAGCGACGGAGGAGGGACTCTGACTTCCTCGGTG
GAGGGCTCTGCCCCGGGGTCAGTGGAGGATCTCTTGAGCCAGGATGAAAGCACTCTCATG
GACCACCAGCACAGCAACTCTCTGGACAACCTGGACAGTGAGTGCAGTGAGGTGTACCAG
CCCCTCACATCCAGCGATGATGCCCTGGATGCGCCGTCGTCCTCTGAGTCAGAAGGCATT
CCAAGCATAGAGCGCTCTCGGAAGGGAAGTAGTGGGAATGCCAGTGAAGTGTCCGTCGCT
TGCTTGACGGAACGGATCCACCAGATGGAGGAGAACCAGCACAGCACGAGTGAGGAGCTC
CAGGCGACTCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAAACTACCTTCTGCAGGGGAGGGTGCTCATGATGTGGCATTGGCCAAGCGTTCCCGC
AGTCGCACAGCCACGGAATGTGACGTCCGTATGAGCAAGTCCAAATCGGACAATCAGATC
AGTGACAGAGCTGCCCTGGAAGCCAAAGTGAAGGATCTCCTCACGTTGGGGGGGACCAAG
GATGTGGAGATTTTCCATTTGAGGAGTGAGCTCCGGGACATGCGTGCTCAGCTGGGCATC
AGTGAGGACCACTCCGAGGGAGGTGAGAGGACTGAGGAGAAGGAAGCTGCCACTGCTCAC
CAGCCAACCGACGTTGAGTCCACTTTGTTGCAGTTACAGGAGCAGAATGCCGCTATCCGT
GAGGAGCTCAACCAGCTGAAAAATGAAAACAGGATGCTCAAGGACAGGTTGAACGCACTG
GGCTTCTCCCTGGAGCAGAGGTTGGACCATTCTGAAAAGCTGTTTGGCTACCAGTCCTTG
AGTCCTGAAATCACCCCCGGCAACCAGAGCGACGGAGGAGGGACTCTGACTTCCTCGGTG
GAGGGCTCTGCCCCGGGGTCAGTGGAGGATCTCTTGAGCCAGGATGAAAGCACTCTCATG
GACCACCAGCACAGCAACTCTCTGGACAACCTGGACAGTGAGTGCAGTGAGGTGTACCAG
CCCCTCACATCCAGCGATGATGCCCTGGATGCGCCGTCGTCCTCTGAGTCAGAAGGCATT
CCAAGCATAGAGCGCTCTCGGAAGGGAAGTAGTGGGAATGCCAGTGAAGTGTCCGTCGCT
TGCTTGACGGAACGGATCCACCAGATGGAGGAGAACCAGCACAGCACGAGTGAGGAGCTC
CAGGCGACTCTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|26342913|dbj|BAC35113.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|26342913|dbj|BAC35113.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               477-596, + strand, RNAz p=0.565354

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               477-596, + strand, RNAz p=0.565354

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-852, gnl|bosTau2|chr17 (44959382-44958528)
               

               
               1-852, gnl|Hg17|chr22 (23041908-23042756)
               

               
               1-852, gnl|Mm7|chr10 (74900828-74901679)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-852, gnl|bosTau2|chr17 (44959382-44958528)
               

               
               1-852, gnl|Hg17|chr22 (23041908-23042756)
               

               
               1-852, gnl|Mm7|chr10 (74900828-74901679)

	1-852, gnl\|bosTau2\|chr17 (44959382-44958528)
	1-852, gnl\|Hg17\|chr22 (23041908-23042756)
	1-852, gnl\|Mm7\|chr10 (74900828-74901679)