Non-Coding RNA Search

Ss1.1-Pig3-SRG8020E03.3

Sequence:


               
               GTTAGAGCTGGCACCCACCCTCGTGATCACAGGCAGTGATCCAAGCCCACTGGGAATACT
AAGCCCATCTCTCCCGACAGCTTCTCTTACGCCAGCACTTTTTTCACAGACCCCTATCTT
ACTGACTCCGAGCCCCTTGCTCTCCAGCATCCACTTTTGGAGCACTCTCAGCCCCGTTGC
TCCCNTGAGTCCAGCCAGACTGCAAGGTGCTAACACACTCTTCCAGTTTCCTTCTGTGCT
GAACAGTCATGGGCCATTCACTCTGTCTGGCCTGGATGGACCTTCCACCCCTGGCCCATT
TTCCCCAGATCTACAGAAAACATAACCTATGCACTTGTGGAATGAGAGAGCCAAGGAATA
AAGAAACAGAGAGATACTCAACATGATTACATTTAAAGTGAGCGATCGATACTTCCACAC
TGCTGATAATAGACTCTTGGGATTTCTGCCGCTCCCATTAAAATGCTTTTGTAGGATTCC
CTTTGAATGGGACTCAAGTTAGACTGTGTATGCAAATGCCTTAATTGGAGTCCAAACTCC
ACCTCCCTCTTTTTCTGTTTAAAAAATATTTTGAACTTTGTGTTAAAGACATTTTTGGTG
GGGTTTAGCAGCTAGCTATGCTTCGTAAGAGCAATGATGAACAAAGTTACTCCTCTGCCT
TATTGGGACCTTAGGCTAGGGAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTAGAGCTGGCACCCACCCTCGTGATCACAGGCAGTGATCCAAGCCCACTGGGAATACT
AAGCCCATCTCTCCCGACAGCTTCTCTTACGCCAGCACTTTTTTCACAGACCCCTATCTT
ACTGACTCCGAGCCCCTTGCTCTCCAGCATCCACTTTTGGAGCACTCTCAGCCCCGTTGC
TCCCNTGAGTCCAGCCAGACTGCAAGGTGCTAACACACTCTTCCAGTTTCCTTCTGTGCT
GAACAGTCATGGGCCATTCACTCTGTCTGGCCTGGATGGACCTTCCACCCCTGGCCCATT
TTCCCCAGATCTACAGAAAACATAACCTATGCACTTGTGGAATGAGAGAGCCAAGGAATA
AAGAAACAGAGAGATACTCAACATGATTACATTTAAAGTGAGCGATCGATACTTCCACAC
TGCTGATAATAGACTCTTGGGATTTCTGCCGCTCCCATTAAAATGCTTTTGTAGGATTCC
CTTTGAATGGGACTCAAGTTAGACTGTGTATGCAAATGCCTTAATTGGAGTCCAAACTCC
ACCTCCCTCTTTTTCTGTTTAAAAAATATTTTGAACTTTGTGTTAAAGACATTTTTGGTG
GGGTTTAGCAGCTAGCTATGCTTCGTAAGAGCAATGATGAACAAAGTTACTCCTCTGCCT
TATTGGGACCTTAGGCTAGGGAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q8C9K0_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8C9K0_MOUSE

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               224-342, - strand, RNAz p=0.793049
               

               
               461-552, - strand, RNAz p=0.747411

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               224-342, - strand, RNAz p=0.793049
               

               
               461-552, - strand, RNAz p=0.747411

Aligned organism(s): 21 entry(ies)

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Aligned organism(s): 21 entry(ies)

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               1-109, gnl|bosTau2|chr16 (1493849-1493741)
               

               
               1-109, gnl|canFam2|chr38 (5081375-5081519)
               

               
               1-109, gnl|danRer3|chr11 (41133745-41133621)
               

               
               1-109, gnl|dasNov1|scaffold_12816 (90256-90398)
               

               
               1-109, gnl|echTel1|scaffold_230245 (125-269)
               

               
               1-109, gnl|fr1|chrUn (172976943-172977076)
               

               
               1-109, gnl|galGal2|chr26 (800710-800854)
               

               
               1-109, gnl|hg17|chr1 (202320747-202320891)
               

               
               1-109, gnl|Hg17|chr1 (202320859-202320751)
               

               
               1-109, gnl|loxAfr1|scaffold_5895 (28493-28637)
               

               
               1-109, gnl|mm7|chr1 (131913933-131913789)
               

               
               1-109, gnl|Mm7|chr1 (131913819-131913927)
               

               
               1-109, gnl|monDom2|scaffold_13 (7417646-7417791)
               

               
               1-109, gnl|oryCun1|scaffold_130819 (8193-8049)
               

               
               1-109, gnl|panTro1|chr1 (185278752-185278896)
               

               
               1-109, gnl|rheMac2|chr1 (164794674-164794530)
               

               
               1-109, gnl|rn3|chr13 (44915350-44915206)
               

               
               1-109, gnl|xenTro1|scaffold_19 (3739113-3739257)
               


               
               224-676, gnl|bosTau2|chr16 (1491589-1491135)
               

               
               224-676, gnl|Hg17|chr1 (202317432-202316945)
               

               
               224-676, gnl|Mm7|chr1 (131919015-131919449)

Aligned organism(s): 21 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-109, gnl|bosTau2|chr16 (1493849-1493741)
               

               
               1-109, gnl|canFam2|chr38 (5081375-5081519)
               

               
               1-109, gnl|danRer3|chr11 (41133745-41133621)
               

               
               1-109, gnl|dasNov1|scaffold_12816 (90256-90398)
               

               
               1-109, gnl|echTel1|scaffold_230245 (125-269)
               

               
               1-109, gnl|fr1|chrUn (172976943-172977076)
               

               
               1-109, gnl|galGal2|chr26 (800710-800854)
               

               
               1-109, gnl|hg17|chr1 (202320747-202320891)
               

               
               1-109, gnl|Hg17|chr1 (202320859-202320751)
               

               
               1-109, gnl|loxAfr1|scaffold_5895 (28493-28637)
               

               
               1-109, gnl|mm7|chr1 (131913933-131913789)
               

               
               1-109, gnl|Mm7|chr1 (131913819-131913927)
               

               
               1-109, gnl|monDom2|scaffold_13 (7417646-7417791)
               

               
               1-109, gnl|oryCun1|scaffold_130819 (8193-8049)
               

               
               1-109, gnl|panTro1|chr1 (185278752-185278896)
               

               
               1-109, gnl|rheMac2|chr1 (164794674-164794530)
               

               
               1-109, gnl|rn3|chr13 (44915350-44915206)
               

               
               1-109, gnl|xenTro1|scaffold_19 (3739113-3739257)
               


               
               224-676, gnl|bosTau2|chr16 (1491589-1491135)
               

               
               224-676, gnl|Hg17|chr1 (202317432-202316945)
               

               
               224-676, gnl|Mm7|chr1 (131919015-131919449)

	224-342, - strand, RNAz p=0.793049
	461-552, - strand, RNAz p=0.747411

	1-109, gnl\|bosTau2\|chr16 (1493849-1493741)
	1-109, gnl\|canFam2\|chr38 (5081375-5081519)
	1-109, gnl\|danRer3\|chr11 (41133745-41133621)
	1-109, gnl\|dasNov1\|scaffold_12816 (90256-90398)
	1-109, gnl\|echTel1\|scaffold_230245 (125-269)
	1-109, gnl\|fr1\|chrUn (172976943-172977076)
	1-109, gnl\|galGal2\|chr26 (800710-800854)
	1-109, gnl\|hg17\|chr1 (202320747-202320891)
	1-109, gnl\|Hg17\|chr1 (202320859-202320751)
	1-109, gnl\|loxAfr1\|scaffold_5895 (28493-28637)
	1-109, gnl\|mm7\|chr1 (131913933-131913789)
	1-109, gnl\|Mm7\|chr1 (131913819-131913927)
	1-109, gnl\|monDom2\|scaffold_13 (7417646-7417791)
	1-109, gnl\|oryCun1\|scaffold_130819 (8193-8049)
	1-109, gnl\|panTro1\|chr1 (185278752-185278896)
	1-109, gnl\|rheMac2\|chr1 (164794674-164794530)
	1-109, gnl\|rn3\|chr13 (44915350-44915206)
	1-109, gnl\|xenTro1\|scaffold_19 (3739113-3739257)

	224-676, gnl\|bosTau2\|chr16 (1491589-1491135)
	224-676, gnl\|Hg17\|chr1 (202317432-202316945)
	224-676, gnl\|Mm7\|chr1 (131919015-131919449)