Ss1.1-Pig3-SRG8020I08.5
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GGATGGGAGAGTAAAAATGACTAGTAGGCGGTTGGAAGAGGCAGATGCATTAACCAAGAG
GGAGAGGGAGTATTGTTAGGTGATAGTTTAAGAGAAAGGAAATACATAATCAGTTTGAGA
CATGCCAAGTTTAGGATGCCAGTGGGATGAATCATTCAGCAATAATGTAAAACATCAGAT
CAAAATTAGAGATATAACTGTTGGAGACCTTAGTGTACATTTGATACCTAAATCCAGGGA
TGGATGTCGACGAAAAACATGTAAGACACACATGGAGAAATCAGAGGAATATTTCCAATA
TTAGGAGAACCAGAAGATTATGGGGATTAAACTAGGAAGTGAGGAAGTTTCAGAGAGGTA
ATACACATGGGCAAAATATCAGTGTTTATGATATCTANGTTGTGAAACATGAGTATTTAT
ACTTCTGCATGCAATTTTATTCTTTAGATTTTTTTTTCTTTGCTTCTATAATTGGCTATT
CTCCTCCAAATCATTTTTTGATCATTAGGTCTTATAAATGAAGTCTAGATTCCATCATAG
CACCTGGAAATCATAGATTAACTATGGTATCTGCACATGGATACTCATGGATAACATGAA
TATTAAGTTATGCACTCTAGAGTAAATAAAGATTAGGGCTTAACAAGATCCCCTTGGGAG
ATTTCTGGCAGTGTAAAAGACTGAGCTGATATGAATGAGCCCTGTCCTTCCAATAAGATT
AAGAATAAAAGTCATAATCATAGCCTTGATTAAAAGAAAAAAAGGGAAATCCAATTTTGT
TTTCAAGTCGGTAACAGCTCAAACCCACAGCCAAAAGCAGTAAGTGACACCACAGAATAT
AAGCCTTGGTACCCAGGGTCTTAATACCTACTTGAAGCAAAAACCATGCCTTTGGGTCCA
CAAGCAGCTGGAATTGAGTCTCTTGCTTAAAGCCTAGTCTCAAAGAGCTACAGTGTTGTG
AAAGAAGAATGAGAAAAATGCAATGGTCCAGAGCCATTAAAACCCTTAGGGCCCTGACGG
AAGACAATGCAAAAACTGTTCTGTACCACAAAACTTAGGTCTTCTGGAGCTTCTGTTAAG
GGAGCATTGAAA
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Blue-coloured subsequences are predicted RNA structures by RNAz
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GGATGGGAGAGTAAAAATGACTAGTAGGCGGTTGGAAGAGGCAGATGCATTAACCAAGAG
GGAGAGGGAGTATTGTTAGGTGATAGTTTAAGAGAAAGGAAATACATAATCAGTTTGAGA
CATGCCAAGTTTAGGATGCCAGTGGGATGAATCATTCAGCAATAATGTAAAACATCAGAT
CAAAATTAGAGATATAACTGTTGGAGACCTTAGTGTACATTTGATACCTAAATCCAGGGA
TGGATGTCGACGAAAAACATGTAAGACACACATGGAGAAATCAGAGGAATATTTCCAATA
TTAGGAGAACCAGAAGATTATGGGGATTAAACTAGGAAGTGAGGAAGTTTCAGAGAGGTA
ATACACATGGGCAAAATATCAGTGTTTATGATATCTANGTTGTGAAACATGAGTATTTAT
ACTTCTGCATGCAATTTTATTCTTTAGATTTTTTTTTCTTTGCTTCTATAATTGGCTATT
CTCCTCCAAATCATTTTTTGATCATTAGGTCTTATAAATGAAGTCTAGATTCCATCATAG
CACCTGGAAATCATAGATTAACTATGGTATCTGCACATGGATACTCATGGATAACATGAA
TATTAAGTTATGCACTCTAGAGTAAATAAAGATTAGGGCTTAACAAGATCCCCTTGGGAG
ATTTCTGGCAGTGTAAAAGACTGAGCTGATATGAATGAGCCCTGTCCTTCCAATAAGATT
AAGAATAAAAGTCATAATCATAGCCTTGATTAAAAGAAAAAAAGGGAAATCCAATTTTGT
TTTCAAGTCGGTAACAGCTCAAACCCACAGCCAAAAGCAGTAAGTGACACCACAGAATAT
AAGCCTTGGTACCCAGGGTCTTAATACCTACTTGAAGCAAAAACCATGCCTTTGGGTCCA
CAAGCAGCTGGAATTGAGTCTCTTGCTTAAAGCCTAGTCTCAAAGAGCTACAGTGTTGTG
AAAGAAGAATGAGAAAAATGCAATGGTCCAGAGCCATTAAAACCCTTAGGGCCCTGACGG
AAGACAATGCAAAAACTGTTCTGTACCACAAAACTTAGGTCTTCTGGAGCTTCTGTTAAG
GGAGCATTGAAA
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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
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1-394, gnl|bosTau2|chr13 (11300276-11299865) |
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1-394, gnl|Hg17|chr10 (22161513-22161084) |
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435-636, gnl|bosTau2|chr13 (11299557-11299354) |
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435-636, gnl|canFam2|chr2 (14161947-14161703) |
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435-636, gnl|dasNov1|scaffold_41699 (5311-5513) |
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435-636, gnl|hg17|chr10 (22160834-22161042) |
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435-636, gnl|Hg17|chr10 (22161029-22160833) |
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435-636, gnl|panTro1|chr8_random (16021855-16022067) |
| |
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658-1081, gnl|bosTau2|chr13 (11298797-11298360) |
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658-1081, gnl|canFam2|chr2 (14162650-14162033) |
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658-1081, gnl|dasNov1|scaffold_41699 (4671-5226) |
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658-1081, gnl|hg17|chr10 (22159830-22160444) |
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658-1081, gnl|Hg17|chr10 (22160491-22160070) |
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658-1081, gnl|panTro1|chr8_random (16020854-16021467) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
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1-394, gnl|bosTau2|chr13 (11300276-11299865) |
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1-394, gnl|Hg17|chr10 (22161513-22161084) |
| |
|
435-636, gnl|bosTau2|chr13 (11299557-11299354) |
|
435-636, gnl|canFam2|chr2 (14161947-14161703) |
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435-636, gnl|dasNov1|scaffold_41699 (5311-5513) |
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435-636, gnl|hg17|chr10 (22160834-22161042) |
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435-636, gnl|Hg17|chr10 (22161029-22160833) |
|
435-636, gnl|panTro1|chr8_random (16021855-16022067) |
| |
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658-1081, gnl|bosTau2|chr13 (11298797-11298360) |
|
658-1081, gnl|canFam2|chr2 (14162650-14162033) |
|
658-1081, gnl|dasNov1|scaffold_41699 (4671-5226) |
|
658-1081, gnl|hg17|chr10 (22159830-22160444) |
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658-1081, gnl|Hg17|chr10 (22160491-22160070) |
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658-1081, gnl|panTro1|chr8_random (16020854-16021467) |
