Non-Coding RNA Search

Ss1.1-Pig3-SRG8020O07.5

Sequence:


               
               TCTGTGGGCCTTTCGGACATCGGCCACTCCCTCCACCCTTTGGTCCTGGTATGCGTCCAC
CGCTAGGCTTAAGAGAATATGCACCAGGTGTTCCACCGGGAAAACGGGACCTGCCTCTCG
ACCCTCGAGAATTTTTACCACCAGGACATGCACCTTTTAGACCTTTAAGCTCTCTTGGGG
GAAGAGAGTACTTTTTTCCTGGTACCCGATTACCACCCCCCAATCATGGGCCCCAGGATT
ATCCACCTTCCTCTGCTGCAAGAGACTTACCGCCCTCCGGCTCCAGAGATGAGCCCCCGC
CTGCCTCTCAAGGCGCTAGCCAGGACTGCTCACCGGCTTTAAAACAGAGCCCATAACTGA
CCTTGGACATTCAGTCTGAGAGAAAGTAGACTGTGCACTATTCGTTACAGTTAAGGTTTT
CATTGGCTTCAAAATCCAAAAGCTGATTTTAAAAGGTTTGTTTTTAAATCTAAGCTGCCC
TGGCAGTGTGCATTTTTGAGCCAAACAATTAAAAAAATATCATTTCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTGTGGGCCTTTCGGACATCGGCCACTCCCTCCACCCTTTGGTCCTGGTATGCGTCCAC
CGCTAGGCTTAAGAGAATATGCACCAGGTGTTCCACCGGGAAAACGGGACCTGCCTCTCG
ACCCTCGAGAATTTTTACCACCAGGACATGCACCTTTTAGACCTTTAAGCTCTCTTGGGG
GAAGAGAGTACTTTTTTCCTGGTACCCGATTACCACCCCCCAATCATGGGCCCCAGGATT
ATCCACCTTCCTCTGCTGCAAGAGACTTACCGCCCTCCGGCTCCAGAGATGAGCCCCCGC
CTGCCTCTCAAGGCGCTAGCCAGGACTGCTCACCGGCTTTAAAACAGAGCCCATAACTGA
CCTTGGACATTCAGTCTGAGAGAAAGTAGACTGTGCACTATTCGTTACAGTTAAGGTTTT
CATTGGCTTCAAAATCCAAAAGCTGATTTTAAAAGGTTTGTTTTTAAATCTAAGCTGCCC
TGGCAGTGTGCATTTTTGAGCCAAACAATTAAAAAAATATCATTTCCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q8C5B9_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8C5B9_MOUSE

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               161-277, - strand, RNAz p=0.543124

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               161-277, - strand, RNAz p=0.543124

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               132-216, - strand, RNAmicro p=0.981565

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               132-216, - strand, RNAmicro p=0.981565

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               42-528, gnl|bosTau2|chr16 (13343024-13342538)
               

               
               42-528, gnl|Hg17|chr1 (219227045-219227531)
               

               
               42-528, gnl|Mm7|chrUn_random (7915311-7914829)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               42-528, gnl|bosTau2|chr16 (13343024-13342538)
               

               
               42-528, gnl|Hg17|chr1 (219227045-219227531)
               

               
               42-528, gnl|Mm7|chrUn_random (7915311-7914829)

	42-528, gnl\|bosTau2\|chr16 (13343024-13342538)
	42-528, gnl\|Hg17\|chr1 (219227045-219227531)
	42-528, gnl\|Mm7\|chrUn_random (7915311-7914829)