Non-Coding RNA Search

Ss1.1-Pig3-SRG8021A04.5

Sequence:


               
               CCATCCTGCAGCACCTCAAGTACAAGGAGCACCCAGAGGCCCTGTCCTGTCTGCTGCTTC
ANCTCCGAAGAGAGAAGCCCAGCGAGGAGATGGTGAATCATAGGTTAACAGAGGCTGGGG
AGATCGTATGGGAATCATCCTGTCCCCATCCCATAGCTCACCTGGGGAGAATGACGAGCT
GCGGGCTGGAGCCCATCCCTCATGAGAAGCTGCCGTGCAGCCTCCATCCCCACCCCCTCC
TCTCTGGGGCCCGCAGCCCCGGCGCTGCTGCTCCCACTGACACTGGGCTCCCACTGAAGC
CAGAGGCTGTGCGAAGCCTGGACTGTGGAGGAAGTCCTCGCCCCCTCCCCCAGCCTCCCC
AAAAGCTATTTCAGTAGAGGAGATAAATGGCCGATGGGTGGTCACAGAGGCTAGGATGAG
AGTGAAAACTGTGTGTGCGCGCCCCTCCCCGCTCCCCTTTCAGGTCTTGATCTGCTCTGA
ATAGGCATTTTATAGTTGCCCTCTGTACATCAGTGTGAAATGAGCATTTAATCTGTGATG
TGCTCACGTCGCCTTTTCCTCTNTGAGGGCCGGGTGCCACAGGTGTTCAGGAAGGAATNT
GAGAGGGAGGCCACAGCCCCACCCGGGGTGCCCTGGAGGCTTGTGATGACCCAAAGTTGG
CACCTCACTCGGGGCCAGAGCCCTGGGAGTCCCAGAGACATGTTCCACAGAACTGTCAAA
TGGTCCCATTTCCTTGGATCTGTCTGTCTTGTCTTTTTCTTTTTTTGGCAGAGATAATCG
CATTTTAAAAGTTGTTTTTAAATGACAATAAAACAAGCCAGAGCCTCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCATCCTGCAGCACCTCAAGTACAAGGAGCACCCAGAGGCCCTGTCCTGTCTGCTGCTTC
ANCTCCGAAGAGAGAAGCCCAGCGAGGAGATGGTGAATCATAGGTTAACAGAGGCTGGGG
AGATCGTATGGGAATCATCCTGTCCCCATCCCATAGCTCACCTGGGGAGAATGACGAGCT
GCGGGCTGGAGCCCATCCCTCATGAGAAGCTGCCGTGCAGCCTCCATCCCCACCCCCTCC
TCTCTGGGGCCCGCAGCCCCGGCGCTGCTGCTCCCACTGACACTGGGCTCCCACTGAAGC
CAGAGGCTGTGCGAAGCCTGGACTGTGGAGGAAGTCCTCGCCCCCTCCCCCAGCCTCCCC
AAAAGCTATTTCAGTAGAGGAGATAAATGGCCGATGGGTGGTCACAGAGGCTAGGATGAG
AGTGAAAACTGTGTGTGCGCGCCCCTCCCCGCTCCCCTTTCAGGTCTTGATCTGCTCTGA
ATAGGCATTTTATAGTTGCCCTCTGTACATCAGTGTGAAATGAGCATTTAATCTGTGATG
TGCTCACGTCGCCTTTTCCTCTNTGAGGGCCGGGTGCCACAGGTGTTCAGGAAGGAATNT
GAGAGGGAGGCCACAGCCCCACCCGGGGTGCCCTGGAGGCTTGTGATGACCCAAAGTTGG
CACCTCACTCGGGGCCAGAGCCCTGGGAGTCCCAGAGACATGTTCCACAGAACTGTCAAA
TGGTCCCATTTCCTTGGATCTGTCTGTCTTGTCTTTTTCTTTTTTTGGCAGAGATAATCG
CATTTTAAAAGTTGTTTTTAAATGACAATAAAACAAGCCAGAGCCTCA

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               91-249, - strand, RNAz p=0.954621
               

               
               288-422, - strand, RNAz p=0.973645
               

               
               501-620, + strand, RNAz p=0.51096

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               91-249, - strand, RNAz p=0.954621
               

               
               288-422, - strand, RNAz p=0.973645
               

               
               501-620, + strand, RNAz p=0.51096

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AK055174, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AK055174, +

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               91-827, gnl|bosTau2|chr3 (7991510-7992246)
               

               
               91-827, gnl|Hg17|chr1 (150558868-150559628)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               91-827, gnl|bosTau2|chr3 (7991510-7992246)
               

               
               91-827, gnl|Hg17|chr1 (150558868-150559628)

	91-249, - strand, RNAz p=0.954621
	288-422, - strand, RNAz p=0.973645
	501-620, + strand, RNAz p=0.51096

	91-827, gnl\|bosTau2\|chr3 (7991510-7992246)
	91-827, gnl\|Hg17\|chr1 (150558868-150559628)