Non-Coding RNA Search

Ss1.1-Pig3-SRG8021C23.5

Sequence:


               
               TAAAAAACTTCAGCTACCCGCCCTCCTAAAATAACTCCACTTCCCTGGCTGTGGCTCCTC
CCTCACCCAAAGAGGCCCCAGCAACTCCACTCAGAGGAGCCTCCACTCCCCTAGATGTGG
CTCCTTCCTCTCCAAAAGGGGGCCCAGTGACTCCATCTCCCAAAAAAGCTCCAGCTACCC
CACCACCTAAAAGAGACCCCACTCCTCCAGCAGTGGCTCCTCCATCTCCAAAAGGGGGCC
CAGTGACTCCATCTCCCAAAAAAGCTCCAGCTACCGCACCTCCTAAACAAGATCCCACTG
CCCCAGCTGTGGCTCCTCTTTCCCCCAAAGGGGGCCCCACTCCCCCAGCTATGGCTCCTC
CCTCTGCAAAAGGGGGCCCAGTGGCTCCAGCTTCCCCACCTCATAAAAGAGATCCCACTC
CTCCAGCAGTGGTTCCTCCCTCTCCAAAAGGGGGCCCAGCAACTCAATCTCCCAAAAAAG
CTCCAGCTTCCCCACCTCCTAAAAGAGGTCCCACTCCTCCAGCAGTGGTTCCTCCCTCTC
CAAAAGGGGGCCCAGCAACTCAATCTCCCAAAAAAAGCTCCAGCTTCCCCACCTCCTAAA
AGAGATCCCACTCCTCCAGCAGTGGTTCCTCCCTCTCCAAAAGGGGGCCCAGCGACTCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAAAAAACTTCAGCTACCCGCCCTCCTAAAATAACTCCACTTCCCTGGCTGTGGCTCCTC
CCTCACCCAAAGAGGCCCCAGCAACTCCACTCAGAGGAGCCTCCACTCCCCTAGATGTGG
CTCCTTCCTCTCCAAAAGGGGGCCCAGTGACTCCATCTCCCAAAAAAGCTCCAGCTACCC
CACCACCTAAAAGAGACCCCACTCCTCCAGCAGTGGCTCCTCCATCTCCAAAAGGGGGCC
CAGTGACTCCATCTCCCAAAAAAGCTCCAGCTACCGCACCTCCTAAACAAGATCCCACTG
CCCCAGCTGTGGCTCCTCTTTCCCCCAAAGGGGGCCCCACTCCCCCAGCTATGGCTCCTC
CCTCTGCAAAAGGGGGCCCAGTGGCTCCAGCTTCCCCACCTCATAAAAGAGATCCCACTC
CTCCAGCAGTGGTTCCTCCCTCTCCAAAAGGGGGCCCAGCAACTCAATCTCCCAAAAAAG
CTCCAGCTTCCCCACCTCCTAAAAGAGGTCCCACTCCTCCAGCAGTGGTTCCTCCCTCTC
CAAAAGGGGGCCCAGCAACTCAATCTCCCAAAAAAAGCTCCAGCTTCCCCACCTCCTAAA
AGAGATCCCACTCCTCCAGCAGTGGTTCCTCCCTCTCCAAAAGGGGGCCCAGCGACTCCA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               40-148, - strand, RNAz p=0.97947

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-148, - strand, RNAz p=0.97947

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-350, gnl|bosTau2|chr5 (33049935-33050287)
               

               
               2-350, gnl|Hg17|chr12 (55397688-55397201)
               

               
               2-350, gnl|Mm7|chr10 (127544573-127544997)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-350, gnl|bosTau2|chr5 (33049935-33050287)
               

               
               2-350, gnl|Hg17|chr12 (55397688-55397201)
               

               
               2-350, gnl|Mm7|chr10 (127544573-127544997)

	2-350, gnl\|bosTau2\|chr5 (33049935-33050287)
	2-350, gnl\|Hg17\|chr12 (55397688-55397201)
	2-350, gnl\|Mm7\|chr10 (127544573-127544997)