Non-Coding RNA Search

Ss1.1-Pig3-SRG8021H17.3

Sequence:


               
               GAGAATCCAATTCAAGTCTGAAAAAGTTAATCAGCAGGGAAGGCAGTCTGTTGGGCATTT
AAACCAGATAGTTAATATTTCTGAAATCTATGTGAGGAATTTCCTTTGTTAAAAAAAAAA
AAAGGTTTTTATGAGCTTGTACAGCTGAGACTGTTTAGTGTAGCCCTGTGCCCAGATGGT
AATGAAGCCAGCATATGACAGATCAGTTTGCACAGGGGACATGGGACATGCAGGGGTTGC
CATATAGACCTGAAGCCCAAACGTGGAGCTGTCAGAGAGGGACGGATCCTTCTCAGAATA
AAGAATTAAGACAATTACCAAGAACTCCACCAAGAGAGCACCAGGACAGTGATTAGCAGG
GTTACCTCCTACAGCCAGGGAATGGTATTTCTTAAGCAGAAGGATCCAGGTTAAATGTCT
GGTTGCTGCTGCCATCTTCCTTCCTATATACTTCCCTTAAACCGCCATACCTCATATCAT
GGTCAAGGCAGGAAAGTGAGTCTCTGCCTCTAAAGTACTGTCCTAACTAAGAGCTTGGGT
GTCCTTGGGAAGATACCCACTCTTTCCCAACTACGTGCTCCCCAGGGACTGGTAAATATT
AGAAAAGGTGAATTGCCACAAACTCCAAACAGGTGCTGGCAACAAAATTAATGCTGGAGT
TGTGCCAGGGATGGGGTGGGGGCGGGAGAGTCAGGGTACCCACCACTGAGGATGCTCCCA
TGAGCTGTAGGTTCTTCTCATTCGTTCCATGCTTGACACCATGGGGTGTTTTTCTCCCCA
AACAGTGAAAGTAATGATGCCTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGAATCCAATTCAAGTCTGAAAAAGTTAATCAGCAGGGAAGGCAGTCTGTTGGGCATTT
AAACCAGATAGTTAATATTTCTGAAATCTATGTGAGGAATTTCCTTTGTTAAAAAAAAAA
AAAGGTTTTTATGAGCTTGTACAGCTGAGACTGTTTAGTGTAGCCCTGTGCCCAGATGGT
AATGAAGCCAGCATATGACAGATCAGTTTGCACAGGGGACATGGGACATGCAGGGGTTGC
CATATAGACCTGAAGCCCAAACGTGGAGCTGTCAGAGAGGGACGGATCCTTCTCAGAATA
AAGAATTAAGACAATTACCAAGAACTCCACCAAGAGAGCACCAGGACAGTGATTAGCAGG
GTTACCTCCTACAGCCAGGGAATGGTATTTCTTAAGCAGAAGGATCCAGGTTAAATGTCT
GGTTGCTGCTGCCATCTTCCTTCCTATATACTTCCCTTAAACCGCCATACCTCATATCAT
GGTCAAGGCAGGAAAGTGAGTCTCTGCCTCTAAAGTACTGTCCTAACTAAGAGCTTGGGT
GTCCTTGGGAAGATACCCACTCTTTCCCAACTACGTGCTCCCCAGGGACTGGTAAATATT
AGAAAAGGTGAATTGCCACAAACTCCAAACAGGTGCTGGCAACAAAATTAATGCTGGAGT
TGTGCCAGGGATGGGGTGGGGGCGGGAGAGTCAGGGTACCCACCACTGAGGATGCTCCCA
TGAGCTGTAGGTTCTTCTCATTCGTTCCATGCTTGACACCATGGGGTGTTTTTCTCCCCA
AACAGTGAAAGTAATGATGCCTGT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               569-688, + strand, RNAz p=0.928779

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               569-688, + strand, RNAz p=0.928779

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               101-804, gnl|bosTau2|chr21 (12093357-12092662)
               

               
               101-804, gnl|Hg17|chr15 (89313198-89313861)
               

               
               101-804, gnl|Mm7|chr7 (76182551-76181879)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               101-804, gnl|bosTau2|chr21 (12093357-12092662)
               

               
               101-804, gnl|Hg17|chr15 (89313198-89313861)
               

               
               101-804, gnl|Mm7|chr7 (76182551-76181879)

	101-804, gnl\|bosTau2\|chr21 (12093357-12092662)
	101-804, gnl\|Hg17\|chr15 (89313198-89313861)
	101-804, gnl\|Mm7\|chr7 (76182551-76181879)