Non-Coding RNA Search

Ss1.1-Pig3-SRG8021I05.3

Sequence:


               
               AACTCATGTTTTGTAATTATAGAGGCAAATGAGTTTTTACTTTTTAAAGAGTTTTAAGGG
AATAATTGTGAGTTTCTGTGCAGCAAAGTGGCTAATTACTCATTAAACATAAGAATGTAG
TGTCTAAATCCAGATTTTTTCTTACTTCTGGTACACTTTAGATTGCTTACCTAGTATGTA
TTAGGGGTTTTTGACCCTGAGTTTTATCAACTTTTCTAGTTTTATTTTATTTTTATAAAA
TAATTGAAAAAACCAAAAATGAATTCAAAAGTTCCATAGGTAGATCTTTCCCTTTAATTT
CCCCCCATGCAAAAAAAAAAAAAAAAAAAAATTTTAGAAAGACATTTTGAATCAAAATGT
ATTATGACCATGTAAAGTTTACTGTTTTCTAAGAAGCTGAGCAGCTAAAGGGCCTCATTC
CAGGTGGTACTGTGTGTGCCGTCTGCGAACGCGGTTGCCTGTGTGGTGGGTCCACGTGGC
AGTGTCTGTGCTTGGTGTAGAGACCGTGCAGTGCTGTTGTGTAAATGGACAGTTCCTGTA
TAAATTAGTGTTTATATGCATTGGCCTCTGTATAACTTTTCATTTGCTACATGAATTGTA
AAATTAAATATGAAATTATAATAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACTCATGTTTTGTAATTATAGAGGCAAATGAGTTTTTACTTTTTAAAGAGTTTTAAGGG
AATAATTGTGAGTTTCTGTGCAGCAAAGTGGCTAATTACTCATTAAACATAAGAATGTAG
TGTCTAAATCCAGATTTTTTCTTACTTCTGGTACACTTTAGATTGCTTACCTAGTATGTA
TTAGGGGTTTTTGACCCTGAGTTTTATCAACTTTTCTAGTTTTATTTTATTTTTATAAAA
TAATTGAAAAAACCAAAAATGAATTCAAAAGTTCCATAGGTAGATCTTTCCCTTTAATTT
CCCCCCATGCAAAAAAAAAAAAAAAAAAAAATTTTAGAAAGACATTTTGAATCAAAATGT
ATTATGACCATGTAAAGTTTACTGTTTTCTAAGAAGCTGAGCAGCTAAAGGGCCTCATTC
CAGGTGGTACTGTGTGTGCCGTCTGCGAACGCGGTTGCCTGTGTGGTGGGTCCACGTGGC
AGTGTCTGTGCTTGGTGTAGAGACCGTGCAGTGCTGTTGTGTAAATGGACAGTTCCTGTA
TAAATTAGTGTTTATATGCATTGGCCTCTGTATAACTTTTCATTTGCTACATGAATTGTA
AAATTAAATATGAAATTATAATAC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               115-233, - strand, RNAz p=0.680319

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               115-233, - strand, RNAz p=0.680319

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-624, gnl|bosTau2|chr14 (2881569-2880945)
               

               
               1-624, gnl|Hg17|chr8 (141602917-141602289)
               

               
               1-624, gnl|Mm7|chr15 (73178955-73178348)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-624, gnl|bosTau2|chr14 (2881569-2880945)
               

               
               1-624, gnl|Hg17|chr8 (141602917-141602289)
               

               
               1-624, gnl|Mm7|chr15 (73178955-73178348)

	1-624, gnl\|bosTau2\|chr14 (2881569-2880945)
	1-624, gnl\|Hg17\|chr8 (141602917-141602289)
	1-624, gnl\|Mm7\|chr15 (73178955-73178348)