Non-Coding RNA Search

Ss1.1-Pig3-SRG8021N14.5

Sequence:


               
               TCAGCCTCAACCATTGCAGGTCTCGTGGCTTCAGTAAGAGTGCTGCCAAGATGCCCTAAA
TGCAAGAAGGAAGCTCAGCAGAAAATGTCTGGCAGGGCTCCAGGCCAGCCATGACTAACA
GGGCCAAGAGTAACCTCTAGGCAGGACTGGTAGCAGGTTCTAGTGATCCTGCAGGCATGT
CCCCTTCAAACCATCAAGGTAAACGCAAATGTATACTTGATGTTTAAAAGACAGAATAAT
ATCGATGCCAGAATTTCTGGACATCCAAGCAGCACCTGTAATCATAACCCCTATTTATCC
TTTATTTACAATAGAATAAAATTACTTTCTCCATGTCACTTAGTTCATACCCAGGATTTC
TTTCTGGGCCCTGAGCTGTAGCCCAGACAAGAGAGGTCTCCTTGAGTAGAGAATATTAAT
GCATCATGCCTCTTCCTGACAGCTCACCTTGGAGTGGGGTGGGACTGAGCATTTTCTCTG
CTGTTGTTTTCCTGCTGCCTCTGCTTTTGGCAATTNTGAAAGAAAATGAACAGTTTACCA
GATATCCAACAGACCCAAACTAACACTAAGGAAAACCTTTTTACCTCTGGGTCACATGCC
CCAATAATGGAGACCCAGATAATGGAGAGGGTGTCAGCTCTGCTCAGGCCAGGGACTAAG
AAGCCCAATCACATTCCAGTTTGTATAGCATGGGTTGGCATGACCACAGATAAGAACAGC
GAGGTATAAGTATATACCGTATATATGGTGAAACAGAGGGCTTCAAGCCTAGCCTCCTGT
AAGAGATGGCTTCTTGGTCTGTCTCCCAGCCAAACACAGGCCTATGAGGAGGGCTCTGAG
AGCACTTAAGTAACAATAAGGATCTAATGGCTTCTGGTCCCTCCCTTCCTATGTGCTTTT
CTGCAGAAGGTAACTTGACAGTAAGCTCNAGGGGAATATCCCCAAGCTTGATCTGTCTTC
CCACTACTACAGCTGCATGTTCTACCCCATGGTTCAGCCTTCACTCCANGAAGGAGCTGA
TGCTCCCCAGAGGCTGGGCACAGTGGAAATTACAATAAAAAAAATTGTGATGCTGAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCAGCCTCAACCATTGCAGGTCTCGTGGCTTCAGTAAGAGTGCTGCCAAGATGCCCTAAA
TGCAAGAAGGAAGCTCAGCAGAAAATGTCTGGCAGGGCTCCAGGCCAGCCATGACTAACA
GGGCCAAGAGTAACCTCTAGGCAGGACTGGTAGCAGGTTCTAGTGATCCTGCAGGCATGT
CCCCTTCAAACCATCAAGGTAAACGCAAATGTATACTTGATGTTTAAAAGACAGAATAAT
ATCGATGCCAGAATTTCTGGACATCCAAGCAGCACCTGTAATCATAACCCCTATTTATCC
TTTATTTACAATAGAATAAAATTACTTTCTCCATGTCACTTAGTTCATACCCAGGATTTC
TTTCTGGGCCCTGAGCTGTAGCCCAGACAAGAGAGGTCTCCTTGAGTAGAGAATATTAAT
GCATCATGCCTCTTCCTGACAGCTCACCTTGGAGTGGGGTGGGACTGAGCATTTTCTCTG
CTGTTGTTTTCCTGCTGCCTCTGCTTTTGGCAATTNTGAAAGAAAATGAACAGTTTACCA
GATATCCAACAGACCCAAACTAACACTAAGGAAAACCTTTTTACCTCTGGGTCACATGCC
CCAATAATGGAGACCCAGATAATGGAGAGGGTGTCAGCTCTGCTCAGGCCAGGGACTAAG
AAGCCCAATCACATTCCAGTTTGTATAGCATGGGTTGGCATGACCACAGATAAGAACAGC
GAGGTATAAGTATATACCGTATATATGGTGAAACAGAGGGCTTCAAGCCTAGCCTCCTGT
AAGAGATGGCTTCTTGGTCTGTCTCCCAGCCAAACACAGGCCTATGAGGAGGGCTCTGAG
AGCACTTAAGTAACAATAAGGATCTAATGGCTTCTGGTCCCTCCCTTCCTATGTGCTTTT
CTGCAGAAGGTAACTTGACAGTAAGCTCNAGGGGAATATCCCCAAGCTTGATCTGTCTTC
CCACTACTACAGCTGCATGTTCTACCCCATGGTTCAGCCTTCACTCCANGAAGGAGCTGA
TGCTCCCCAGAGGCTGGGCACAGTGGAAATTACAATAAAAAAAATTGTGATGCTGAAAAA
AAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               77-187, - strand, RNAz p=0.682321
               

               
               317-407, - strand, RNAz p=0.989531

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               77-187, - strand, RNAz p=0.682321
               

               
               317-407, - strand, RNAz p=0.989531

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               77-814, gnl|bosTau2|chr8 (27798177-27798917)
               

               
               77-814, gnl|Hg17|chr9 (34971482-34972280)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               77-814, gnl|bosTau2|chr8 (27798177-27798917)
               

               
               77-814, gnl|Hg17|chr9 (34971482-34972280)

	77-187, - strand, RNAz p=0.682321
	317-407, - strand, RNAz p=0.989531

	77-814, gnl\|bosTau2\|chr8 (27798177-27798917)
	77-814, gnl\|Hg17\|chr9 (34971482-34972280)