Non-Coding RNA Search

Ss1.1-Pig3-SRG8022A14.3.5

Sequence:


               
               CGTGCGGGTGCCCGCCGAGCCCGCCGGGCGGTGGATCCCCGAGTGCCCGGGCCGGGGCTT
GAGGAGCCGGCACCGGGCCGGGGCGGCGAGGGGCGAGCAGCACAGGAGGCAGCAGTGTGT
GAGAGGACGAGGACCGCCGGCGGAACCCTAAACTAGGACAAACACCAGTCAGAGTGCCGC
AGAGAGAAGAGAAAGATGCAAGCAGATTCCTAATACCATGTATTCCCTGATGGTCACTTC
ATTACTTGTGACGGTGCATCATCCATTGTGACACCATAGGTACTGTGTTCCAATAAGACT
TCTAAAGGTCATTGCTGTGCTTCGTTGAAGACACCACAATTGCATCATGAGCAGCATGGA
TGAGCATCACAACACCCTGTACGAGGCAGTTCGGGAGGTCCTGCATGGGAACTACTGCAA
GTGCTGAAAGTTTCTGGAGATTGTGGAGCTTCAGATCAGCCTGAAGAACTATGACCCTCA
GAAGGACAAATGCTTCTTAGGCACCGTCAGGATTAAGTCTACTCTCCGCCCCAAGTTCTC
CATGTGTGTTCTGGGAGATAAGCAGCATTGTGATGAGGCCAAGGCTGTGGATGTCCTGCA
CATGGACACTGAGGCACTGAAGAAACTCAGCAAGAATAAGAAACTGGTCAAGAAGCTGGC
CAAGAAGTACGATCCCTTTTTGGCTTCAGAGGCTCTATTCAAGCAGATTCCAGGGATCCT
GGGCCCTGGCCTGAATAAGGCTGGCAAGTTCCCTTCCTTGACCCACAATGAGGATATGGT
GGCCAAAGTTGATGAAGTGAAGTCCACGATCAAGTTCCAGATGAAGAAGTGTGGTGTCTG
GCAGTGGCTGTTGGCCACATGAAGATGACAAATGATGAGCTGGTGTACAGCACCCACTTA
GCTCTCAACTTCCTGGTGTCATTGCTCAAGAAAAATTGGCAGAACATCTGGACTTTGTAC
ATTAAGGACACCATGAACAAGCCCCTGCACCTGTACTGAGGATCAGGTCAATAAACCATC
TGCCACCATTTAAAAAAAAAAAAAGAAGAAGAAAAAAGAATTGATCAGGAAATAGGCTGT
CTCTGTCTGCTTTTTCCTTTCCATGAAGCCATCTTAGGATGTAGTCTTCCAAACTCATCA
CTGTTGCCTCAGGGTTTCAGAATGGCTGCTGCACCCTTGCATTGCCTCCACATTNTATAA
AAAGGTGGAAGCCAGTCAAGTCTCTCCTCCATTGAGTGCCTTTATGAGAAGCCCCAACTT
GTGACTTTCATTTCTTTCTCTTGACCAGAACTGTGTTATCTGACCACCCCACTCAATGTA
AGAAAGACTGGGAGATATAAAGTAATTGTTTATGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGTGCGGGTGCCCGCCGAGCCCGCCGGGCGGTGGATCCCCGAGTGCCCGGGCCGGGGCTT
GAGGAGCCGGCACCGGGCCGGGGCGGCGAGGGGCGAGCAGCACAGGAGGCAGCAGTGTGT
GAGAGGACGAGGACCGCCGGCGGAACCCTAAACTAGGACAAACACCAGTCAGAGTGCCGC
AGAGAGAAGAGAAAGATGCAAGCAGATTCCTAATACCATGTATTCCCTGATGGTCACTTC
ATTACTTGTGACGGTGCATCATCCATTGTGACACCATAGGTACTGTGTTCCAATAAGACT
TCTAAAGGTCATTGCTGTGCTTCGTTGAAGACACCACAATTGCATCATGAGCAGCATGGA
TGAGCATCACAACACCCTGTACGAGGCAGTTCGGGAGGTCCTGCATGGGAACTACTGCAA
GTGCTGAAAGTTTCTGGAGATTGTGGAGCTTCAGATCAGCCTGAAGAACTATGACCCTCA
GAAGGACAAATGCTTCTTAGGCACCGTCAGGATTAAGTCTACTCTCCGCCCCAAGTTCTC
CATGTGTGTTCTGGGAGATAAGCAGCATTGTGATGAGGCCAAGGCTGTGGATGTCCTGCA
CATGGACACTGAGGCACTGAAGAAACTCAGCAAGAATAAGAAACTGGTCAAGAAGCTGGC
CAAGAAGTACGATCCCTTTTTGGCTTCAGAGGCTCTATTCAAGCAGATTCCAGGGATCCT
GGGCCCTGGCCTGAATAAGGCTGGCAAGTTCCCTTCCTTGACCCACAATGAGGATATGGT
GGCCAAAGTTGATGAAGTGAAGTCCACGATCAAGTTCCAGATGAAGAAGTGTGGTGTCTG
GCAGTGGCTGTTGGCCACATGAAGATGACAAATGATGAGCTGGTGTACAGCACCCACTTA
GCTCTCAACTTCCTGGTGTCATTGCTCAAGAAAAATTGGCAGAACATCTGGACTTTGTAC
ATTAAGGACACCATGAACAAGCCCCTGCACCTGTACTGAGGATCAGGTCAATAAACCATC
TGCCACCATTTAAAAAAAAAAAAAGAAGAAGAAAAAAGAATTGATCAGGAAATAGGCTGT
CTCTGTCTGCTTTTTCCTTTCCATGAAGCCATCTTAGGATGTAGTCTTCCAAACTCATCA
CTGTTGCCTCAGGGTTTCAGAATGGCTGCTGCACCCTTGCATTGCCTCCACATTNTATAA
AAAGGTGGAAGCCAGTCAAGTCTCTCCTCCATTGAGTGCCTTTATGAGAAGCCCCAACTT
GTGACTTTCATTTCTTTCTCTTGACCAGAACTGTGTTATCTGACCACCCCACTCAATGTA
AGAAAGACTGGGAGATATAAAGTAATTGTTTATGCA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|62654783|ref|XP_217361.3|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|62654783|ref|XP_217361.3|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               932-1056, - strand, RNAz p=0.983481

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               932-1056, - strand, RNAz p=0.983481

Aligned organism(s): 8 entry(ies)

More info

Aligned organism(s): 8 entry(ies)

Help | Less info


               
               372-596, gnl|bosTau2|chr10 (25305327-25305550)
               

               
               372-596, gnl|Hg17|chr16 (84407621-84407397)
               

               
               372-596, gnl|Mm7|chr1 (65236440-65236216)
               


               
               657-1056, gnl|bosTau2|chr11 (19108455-19108849)
               

               
               657-1056, gnl|Hg17|chr8 (18285408-18285016)
               

               
               657-1056, gnl|Mm7|chr2 (60205839-60205443)
               


               
               1200-1351, gnl|bosTau2|chr13 (1977384-1977533)
               

               
               1200-1351, gnl|Hg17|chr20 (12084152-12084281)

Aligned organism(s): 8 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               372-596, gnl|bosTau2|chr10 (25305327-25305550)
               

               
               372-596, gnl|Hg17|chr16 (84407621-84407397)
               

               
               372-596, gnl|Mm7|chr1 (65236440-65236216)
               


               
               657-1056, gnl|bosTau2|chr11 (19108455-19108849)
               

               
               657-1056, gnl|Hg17|chr8 (18285408-18285016)
               

               
               657-1056, gnl|Mm7|chr2 (60205839-60205443)
               


               
               1200-1351, gnl|bosTau2|chr13 (1977384-1977533)
               

               
               1200-1351, gnl|Hg17|chr20 (12084152-12084281)

	372-596, gnl\|bosTau2\|chr10 (25305327-25305550)
	372-596, gnl\|Hg17\|chr16 (84407621-84407397)
	372-596, gnl\|Mm7\|chr1 (65236440-65236216)

	657-1056, gnl\|bosTau2\|chr11 (19108455-19108849)
	657-1056, gnl\|Hg17\|chr8 (18285408-18285016)
	657-1056, gnl\|Mm7\|chr2 (60205839-60205443)

	1200-1351, gnl\|bosTau2\|chr13 (1977384-1977533)
	1200-1351, gnl\|Hg17\|chr20 (12084152-12084281)