Ss1.1-Pig3-SRG8022B22.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCGAAGAGACCAGAAACACCCAAGCAAACTGGCCCTGTCATTATTGAAACCTGGGTAGCA GAGGAAGAGTTGGAATTATGGGAGATCAGGGCGTTTGCTGAGAGAGTGGAGAAAGAAAAG GCACAAGCAGTTGAGCAACAGGCTAAGAAACGGTTGGAACAACAGAAGCCTACAGTAATT GCAGCTTCTACTACTTCCCCAGCCAACAGTACAACTAGTACCATCTCTCCAGCCCCGAAA GTAATGGTGGCCCCCATAAGTGGCTCAGTTACACCTGGAACTAAAATGGTACTCACTACT AAAGTTGGGTCTCCAGCCGCAGTGACATTCCAGCAGAACAAGAACTTCCATCAGACCTTT GCTACCTGGGTTAAGCAAGGCCAGTCAAATTCATGCGTCGTGCAAGTTCAGCAGAAAGTC CTGGGCATCATTCCATCAAGTACAGGAACAAGTCAACAGACTTTTACTTCATTCCAGCCC AGGACAGCGACAGTCACAATTAGGCCCAATACCTCAGTCTCTGGAGGAACCACAAGCACT TCACAAGTAATCGCAGGGCCTCAGATCCGCCCTGGTATGACAGTGATCAGAACACCGCTC CAGCAGTCAACACTAGGAAAGGCAATTATCCGAACACCTGTGATGGTACAGCCAGGTATT CATCCTTCCAGTATTATCATTTTGTAACTGAACAGCCAGTCTAGAAAATCTGTAATACTC TGTGTTTGGCACTCTACGTACTAGAAAATAATAATGTAAATTAAGACTTCAACGTCTACT GAATTTCTGATTCATCGTGGGGTGCATCCATACATCTTATTTCATTTCTAGCATTGTCAA TAAGTGAAAAACANGTCTCGGAAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCGAAGAGACCAGAAACACCCAAGCAAACTGGCCCTGTCATTATTGAAACCTGGGTAGCA GAGGAAGAGTTGGAATTATGGGAGATCAGGGCGTTTGCTGAGAGAGTGGAGAAAGAAAAG GCACAAGCAGTTGAGCAACAGGCTAAGAAACGGTTGGAACAACAGAAGCCTACAGTAATT GCAGCTTCTACTACTTCCCCAGCCAACAGTACAACTAGTACCATCTCTCCAGCCCCGAAA GTAATGGTGGCCCCCATAAGTGGCTCAGTTACACCTGGAACTAAAATGGTACTCACTACT AAAGTTGGGTCTCCAGCCGCAGTGACATTCCAGCAGAACAAGAACTTCCATCAGACCTTT GCTACCTGGGTTAAGCAAGGCCAGTCAAATTCATGCGTCGTGCAAGTTCAGCAGAAAGTC CTGGGCATCATTCCATCAAGTACAGGAACAAGTCAACAGACTTTTACTTCATTCCAGCCC AGGACAGCGACAGTCACAATTAGGCCCAATACCTCAGTCTCTGGAGGAACCACAAGCACT TCACAAGTAATCGCAGGGCCTCAGATCCGCCCTGGTATGACAGTGATCAGAACACCGCTC CAGCAGTCAACACTAGGAAAGGCAATTATCCGAACACCTGTGATGGTACAGCCAGGTATT CATCCTTCCAGTATTATCATTTTGTAACTGAACAGCCAGTCTAGAAAATCTGTAATACTC TGTGTTTGGCACTCTACGTACTAGAAAATAATAATGTAAATTAAGACTTCAACGTCTACT GAATTTCTGATTCATCGTGGGGTGCATCCATACATCTTATTTCATTTCTAGCATTGTCAA TAAGTGAAAAACANGTCTCGGAAG |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 154-243, - strand, RNAz p=0.721979 | |
| 265-393, + strand, RNAz p=0.947565 | |
| 395-513, + strand, RNAz p=0.660565 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 154-243, - strand, RNAz p=0.721979 | |
| 265-393, + strand, RNAz p=0.947565 | |
| 395-513, + strand, RNAz p=0.660565 |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 146-393, gnl|bosTau2|chr19 (42979279-42979032) | |
| 146-393, gnl|canFam2|chr9 (15759164-15758894) | |
| 146-393, gnl|canFam2|chr9 (15758895-15759153) | |
| 146-393, gnl|danRer3|chr3 (22252421-22252687) | |
| 146-393, gnl|danRer3|chr3 (20845790-20846050) | |
| 146-393, gnl|dasNov1|scaffold_7045 (34286-34558) | |
| 146-393, gnl|dasNov1|scaffold_7045 (34557-34299) | |
| 146-393, gnl|echTel1|scaffold_319463 (53072-52801) | |
| 146-393, gnl|echTel1|scaffold_319463 (52802-53060) | |
| 146-393, gnl|fr1|chrUn (120014666-120014424) | |
| 146-393, gnl|fr1|chrUn (120014424-120014666) | |
| 146-393, gnl|galGal2|chr18 (6816089-6815813) | |
| 146-393, gnl|galGal2|chr18 (6815814-6816078) | |
| 146-393, gnl|hg17|chr17 (63354914-63355184) | |
| 146-393, gnl|hg17|chr17 (27458346-27458604) | |
| 146-393, gnl|Hg17|chr17 (63354931-63355178) | |
| 146-393, gnl|loxAfr1|scaffold_39998 (8203-8473) | |
| 146-393, gnl|loxAfr1|scaffold_39998 (8472-8214) | |
| 146-393, gnl|mm7|chr11 (107171841-107171574) | |
| 146-393, gnl|mm7|chr11 (107171575-107171831) | |
| 146-393, gnl|Mm7|chr11 (107171825-107171578) | |
| 146-393, gnl|monDom2|scaffold_18 (17254661-17254383) | |
| 146-393, gnl|monDom2|scaffold_18 (17254384-17254648) | |
| 146-393, gnl|oryCun1|scaffold_100719 (3656-3386) | |
| 146-393, gnl|oryCun1|scaffold_100719 (3387-3645) | |
| 146-393, gnl|panTro1|chr19 (66635359-66635630) | |
| 146-393, gnl|panTro1|chr19_random (14892454-14892196) | |
| 146-393, gnl|rheMac2|chr16 (63279452-63279722) | |
| 146-393, gnl|rheMac2|chr16 (63279721-63279463) | |
| 146-393, gnl|rn3|chr10 (96435431-96435163) | |
| 146-393, gnl|rn3|chr10 (96435164-96435420) | |
| 146-393, gnl|tetNig1|chr18 (1257847-1258079) | |
| 146-393, gnl|tetNig1|chr18 (1258079-1257859) | |
| 146-393, gnl|xenTro1|scaffold_857 (152179-152424) | |
| 146-393, gnl|xenTro1|scaffold_857 (152424-152190) | |
| 395-550, gnl|bosTau2|chr19 (42978290-42978135) | |
| 395-550, gnl|Hg17|chr17 (63355914-63356069) | |
| 395-550, gnl|Mm7|chr11 (107170876-107170721) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 146-393, gnl|bosTau2|chr19 (42979279-42979032) | |
| 146-393, gnl|canFam2|chr9 (15759164-15758894) | |
| 146-393, gnl|canFam2|chr9 (15758895-15759153) | |
| 146-393, gnl|danRer3|chr3 (22252421-22252687) | |
| 146-393, gnl|danRer3|chr3 (20845790-20846050) | |
| 146-393, gnl|dasNov1|scaffold_7045 (34286-34558) | |
| 146-393, gnl|dasNov1|scaffold_7045 (34557-34299) | |
| 146-393, gnl|echTel1|scaffold_319463 (53072-52801) | |
| 146-393, gnl|echTel1|scaffold_319463 (52802-53060) | |
| 146-393, gnl|fr1|chrUn (120014666-120014424) | |
| 146-393, gnl|fr1|chrUn (120014424-120014666) | |
| 146-393, gnl|galGal2|chr18 (6816089-6815813) | |
| 146-393, gnl|galGal2|chr18 (6815814-6816078) | |
| 146-393, gnl|hg17|chr17 (63354914-63355184) | |
| 146-393, gnl|hg17|chr17 (27458346-27458604) | |
| 146-393, gnl|Hg17|chr17 (63354931-63355178) | |
| 146-393, gnl|loxAfr1|scaffold_39998 (8203-8473) | |
| 146-393, gnl|loxAfr1|scaffold_39998 (8472-8214) | |
| 146-393, gnl|mm7|chr11 (107171841-107171574) | |
| 146-393, gnl|mm7|chr11 (107171575-107171831) | |
| 146-393, gnl|Mm7|chr11 (107171825-107171578) | |
| 146-393, gnl|monDom2|scaffold_18 (17254661-17254383) | |
| 146-393, gnl|monDom2|scaffold_18 (17254384-17254648) | |
| 146-393, gnl|oryCun1|scaffold_100719 (3656-3386) | |
| 146-393, gnl|oryCun1|scaffold_100719 (3387-3645) | |
| 146-393, gnl|panTro1|chr19 (66635359-66635630) | |
| 146-393, gnl|panTro1|chr19_random (14892454-14892196) | |
| 146-393, gnl|rheMac2|chr16 (63279452-63279722) | |
| 146-393, gnl|rheMac2|chr16 (63279721-63279463) | |
| 146-393, gnl|rn3|chr10 (96435431-96435163) | |
| 146-393, gnl|rn3|chr10 (96435164-96435420) | |
| 146-393, gnl|tetNig1|chr18 (1257847-1258079) | |
| 146-393, gnl|tetNig1|chr18 (1258079-1257859) | |
| 146-393, gnl|xenTro1|scaffold_857 (152179-152424) | |
| 146-393, gnl|xenTro1|scaffold_857 (152424-152190) | |
| 395-550, gnl|bosTau2|chr19 (42978290-42978135) | |
| 395-550, gnl|Hg17|chr17 (63355914-63356069) | |
| 395-550, gnl|Mm7|chr11 (107170876-107170721) |