Non-Coding RNA Search

Ss1.1-Pig3-SRG8022F13.5

Sequence:


               
               GCGGCTCGAGCAAAGGTCTGAGCATTTATTTCGTACAAGGAAACAAAACAAAACCAAACC
ACACACAGCCAATCCCGGCGGTGGAGCGGGGCGCACTGCACACGCAGCCCCGCTCGCCAA
GGCTGCCCAAGCCGGCTCCAGATCTCATGGCGCGCCCCGAATCCGTCCCCCGCTCTCGTG
TCAGCGCCTCTGCACGCCTCTGAGCTCGGGGCGCCGGGGCGCGGGAGAGGAAAGAACCCT
CGGGCCGAGCCCCTTTTAGAGGCTGGGCGCTTCCGCCTCGGTTCCTCGCCACCAAGTCCC
GGAGGGCATCGCCACATCACCTCGGACCACTGGAAAGAGGGGGCCTCAGGGCTGGGGCCC
CAGCACTGCCGTGGCCTCCTAGGCCGCCCCCAGGCAGGAAGGAGCGCGAGGAACAAAGAG
GGCGGGAGAGAGCTAGTCTCTCGGCCCCGCGCGCAACCGTCCGTGGAAGAGAAGCAGCCT
CAGCGCAGCCGAGCCAACCTGGGCGCGGGTGGAACTTTACAGCCCTGGGAACGACTGGGC
TCCCGAAGGCTCCGAGCTCCGGATCCCGGCTCCCTGCCTCTGACAGTGCGGGCGCTGCCA
CCACAACAGCTTTCAGGACCTAAGGAGGGGGCCCTGGGCTAAGGGAGCGGCCAGAGTCCT
GGTTTCCAAACGTGCCAGGGGCGCCTGCGTTGCCTGGCCTTCGGCGGGGAGACCGAGCCC
ACCCCCCATGCCTTTAGGCTGTATTTATGACTTACTTTCATCTTACAGAACCCAGGAGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGCTCGAGCAAAGGTCTGAGCATTTATTTCGTACAAGGAAACAAAACAAAACCAAACC
ACACACAGCCAATCCCGGCGGTGGAGCGGGGCGCACTGCACACGCAGCCCCGCTCGCCAA
GGCTGCCCAAGCCGGCTCCAGATCTCATGGCGCGCCCCGAATCCGTCCCCCGCTCTCGTG
TCAGCGCCTCTGCACGCCTCTGAGCTCGGGGCGCCGGGGCGCGGGAGAGGAAAGAACCCT
CGGGCCGAGCCCCTTTTAGAGGCTGGGCGCTTCCGCCTCGGTTCCTCGCCACCAAGTCCC
GGAGGGCATCGCCACATCACCTCGGACCACTGGAAAGAGGGGGCCTCAGGGCTGGGGCCC
CAGCACTGCCGTGGCCTCCTAGGCCGCCCCCAGGCAGGAAGGAGCGCGAGGAACAAAGAG
GGCGGGAGAGAGCTAGTCTCTCGGCCCCGCGCGCAACCGTCCGTGGAAGAGAAGCAGCCT
CAGCGCAGCCGAGCCAACCTGGGCGCGGGTGGAACTTTACAGCCCTGGGAACGACTGGGC
TCCCGAAGGCTCCGAGCTCCGGATCCCGGCTCCCTGCCTCTGACAGTGCGGGCGCTGCCA
CCACAACAGCTTTCAGGACCTAAGGAGGGGGCCCTGGGCTAAGGGAGCGGCCAGAGTCCT
GGTTTCCAAACGTGCCAGGGGCGCCTGCGTTGCCTGGCCTTCGGCGGGGAGACCGAGCCC
ACCCCCCATGCCTTTAGGCTGTATTTATGACTTACTTTCATCTTACAGAACCCAGGAGGC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               657-775, - strand, RNAz p=0.664412

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               657-775, - strand, RNAz p=0.664412

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               10-775, gnl|bosTau2|chr4 (37109125-37109886)
               

               
               10-775, gnl|Hg17|chr7 (26958382-26957607)
               

               
               10-775, gnl|Mm7|chr6 (52169605-52168853)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               10-775, gnl|bosTau2|chr4 (37109125-37109886)
               

               
               10-775, gnl|Hg17|chr7 (26958382-26957607)
               

               
               10-775, gnl|Mm7|chr6 (52169605-52168853)

	10-775, gnl\|bosTau2\|chr4 (37109125-37109886)
	10-775, gnl\|Hg17\|chr7 (26958382-26957607)
	10-775, gnl\|Mm7\|chr6 (52169605-52168853)