Non-Coding RNA Search

Ss1.1-Pig3-SRG8022J23.3

Sequence:


               
               CAAAAAATAAATAAATAAAAATAAAAAAATAAAAACATTTCATTAAAATGTTTAAAAATC
ATTCATCAACTATTTTTGTCAGAATGAAGAGCAAAAAGAACCAAATTCTTCTCTAGGGAA
AAGTATTGAAACGTTCCACTTTAACAGTTTACAGCCAGCTTTCAGTTGTTTCATTGGTGT
AGTTAATACTTTTTGGTGAAAAAATAATACTTAGTCTTTTTGTAAATTTTATAACATCCT
TTGTACCTTCTCTGTTAATTACAGTCCTGTGCACATTATACAGAATGCTGGGGTTTAAAA
AGGGGAGGAGCCCATTGTTTCTCAAAGTTTAGTTAGTCTAAAGCATAATTGAGTACTTCA
TAGTTTTCCAAGGAGGGATCTTTTGCGTTGGCCCACAGGGGAGGGTGAAAGTCATTGGGT
GATTTTCTTGTCCCTACTAAAAGTCGTTCAAGGTGGGGATACTGATTTTGTTTTTTTTTA
AGCAGACAGTAAACATTGCTTTTAAAAGGTGTCATGACCTGTTCTAGTGTGCACTGTCAA
ATAAAAGTGCTGGTAATAGAACACGGATCAAATAAATCATTGAAAACTGCAGATGATGTG
TACAACAGAATTTTAGCCAAAAGTTTACCCCCAAATCCCATAGTCGTATATTTTAGTAGA
CGCATAAACTGCAGCTGAGTGCTCAGTTTGAATTTTTCATGTTCATTTTGCCTGCCTTCC
CTCCCTGGTGTCTTTAGTCTTCTGGAGGAGTAGAGAGTAAAAGCAGGACAAAGCAAAACC
ACACTAGATTCTTAGTGTAGTGTCTTATTAACTTAGAATGTTTGTGGAATTATTTTTTTT
AAGATACTTAACGTGAAAAGTATATCTCCATCTTCAAATAAGGACTATTTCATATTAATT
ATATTGGTTTAAAATGCCAGATGTATGGTATTAAAACACCTGGAAGGGCATTTTTACATG
TCTACAAAATCTGGGTAAATAGTACCCTGACGCTGAAAACGAAGCAAATGATTTAAGACA
TTGAATGTCTTTCTCATTTTTTACCCTACATGCTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAAAAATAAATAAATAAAAATAAAAAAATAAAAACATTTCATTAAAATGTTTAAAAATC
ATTCATCAACTATTTTTGTCAGAATGAAGAGCAAAAAGAACCAAATTCTTCTCTAGGGAA
AAGTATTGAAACGTTCCACTTTAACAGTTTACAGCCAGCTTTCAGTTGTTTCATTGGTGT
AGTTAATACTTTTTGGTGAAAAAATAATACTTAGTCTTTTTGTAAATTTTATAACATCCT
TTGTACCTTCTCTGTTAATTACAGTCCTGTGCACATTATACAGAATGCTGGGGTTTAAAA
AGGGGAGGAGCCCATTGTTTCTCAAAGTTTAGTTAGTCTAAAGCATAATTGAGTACTTCA
TAGTTTTCCAAGGAGGGATCTTTTGCGTTGGCCCACAGGGGAGGGTGAAAGTCATTGGGT
GATTTTCTTGTCCCTACTAAAAGTCGTTCAAGGTGGGGATACTGATTTTGTTTTTTTTTA
AGCAGACAGTAAACATTGCTTTTAAAAGGTGTCATGACCTGTTCTAGTGTGCACTGTCAA
ATAAAAGTGCTGGTAATAGAACACGGATCAAATAAATCATTGAAAACTGCAGATGATGTG
TACAACAGAATTTTAGCCAAAAGTTTACCCCCAAATCCCATAGTCGTATATTTTAGTAGA
CGCATAAACTGCAGCTGAGTGCTCAGTTTGAATTTTTCATGTTCATTTTGCCTGCCTTCC
CTCCCTGGTGTCTTTAGTCTTCTGGAGGAGTAGAGAGTAAAAGCAGGACAAAGCAAAACC
ACACTAGATTCTTAGTGTAGTGTCTTATTAACTTAGAATGTTTGTGGAATTATTTTTTTT
AAGATACTTAACGTGAAAAGTATATCTCCATCTTCAAATAAGGACTATTTCATATTAATT
ATATTGGTTTAAAATGCCAGATGTATGGTATTAAAACACCTGGAAGGGCATTTTTACATG
TCTACAAAATCTGGGTAAATAGTACCCTGACGCTGAAAACGAAGCAAATGATTTAAGACA
TTGAATGTCTTTCTCATTTTTTACCCTACATGCTGT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               658-814, - strand, RNAz p=0.997162

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               658-814, - strand, RNAz p=0.997162

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

Help | Less info


               
               52-1056, gnl|bosTau2|chr16 (15085839-15086852)
               

               
               52-1056, gnl|Hg17|chr9 (77586986-77586012)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               52-1056, gnl|bosTau2|chr16 (15085839-15086852)
               

               
               52-1056, gnl|Hg17|chr9 (77586986-77586012)

	52-1056, gnl\|bosTau2\|chr16 (15085839-15086852)
	52-1056, gnl\|Hg17\|chr9 (77586986-77586012)