Non-Coding RNA Search

Ss1.1-Pig3-SRG8022K09.5

Sequence:


               
               CTCTGGGGAGGAGGGCGGGAAGAAGAAGTCGTCAGGGCCAGACTGCAGGAGCAGAGATCG
AGCCCCTGGGAAAGAGGTCCACAGAGAAAGATGTCCTGGGAGGAGATGAAGGATCTCCAG
CTGGAGGAGAAACCCCTGCCACTGGAAATCAAAGAACTGAATGGAATCCTGATGACCAAG
ATGATGAGCGACAATTGGGACAAAATCTGGAATTTCCAAGCAAAACCTGATGATCTGCTC
ATCGCCACCTACACAAAGGCAGGCACTACCTGGACACAGGAGATTGTGGACATGATCCAT
AATGACGGGGACGTGCAGAAGTGCCAGCGGGCCAACACCTTCGACCGGCACCCTTTCATC
GAGTGGACTCTGCCACTGCCCCTCAATTCAGGTCTGGATCTGGCCATCAAAATGCCTTCT
CCGAGAACACTGAAGACTCACCTGCCTGTTCAGATGGTCCCACCTTCCTTCTGGAAAGAA
CCTCTCCAAATGAGGATTCTGCCCGGGGCCTCTGCCGACTCCCTGGTCTCGTTGAGCGAC
GTCTTTCACCTGAGACAGCCACGCAGGTTTTCTAAGTTGCGGCTGCTCTTGATGCCTGTC
TCCCGCCTTCCCTCAGTGCTGTGGGGCTCCTGGTATGACCACGTGAGGGGCTGGTGGGAC
GCCAAGGACCGGCACCGCATCCTCTACCTCTTCTACGAGGACATGAAGGAGGTGAGGGCA
TGCTGCCACCATCATATGCCCAATCCCCCCCCACCCCCTTTCCAGATCAGCTTTATCCTC
AGGCCCTATAACCACTTTTTAAAAAAATCTTCTAATTATTCTTTGCTTCTGTTCACAATT
TCAAGAAGATCTGGAAACATCACATTTTATGATCACTTTTTCTTTTTTTCTTTTCTTTTT
TTTTTTTTTTTC------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
TAAGGATCCGGTGTTGCCATGACACATGATTCACTTGGGAACCTCCATATGACGCAGGTG
TAGCCCTAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCTGGGGAGGAGGGCGGGAAGAAGAAGTCGTCAGGGCCAGACTGCAGGAGCAGAGATCG
AGCCCCTGGGAAAGAGGTCCACAGAGAAAGATGTCCTGGGAGGAGATGAAGGATCTCCAG
CTGGAGGAGAAACCCCTGCCACTGGAAATCAAAGAACTGAATGGAATCCTGATGACCAAG
ATGATGAGCGACAATTGGGACAAAATCTGGAATTTCCAAGCAAAACCTGATGATCTGCTC
ATCGCCACCTACACAAAGGCAGGCACTACCTGGACACAGGAGATTGTGGACATGATCCAT
AATGACGGGGACGTGCAGAAGTGCCAGCGGGCCAACACCTTCGACCGGCACCCTTTCATC
GAGTGGACTCTGCCACTGCCCCTCAATTCAGGTCTGGATCTGGCCATCAAAATGCCTTCT
CCGAGAACACTGAAGACTCACCTGCCTGTTCAGATGGTCCCACCTTCCTTCTGGAAAGAA
CCTCTCCAAATGAGGATTCTGCCCGGGGCCTCTGCCGACTCCCTGGTCTCGTTGAGCGAC
GTCTTTCACCTGAGACAGCCACGCAGGTTTTCTAAGTTGCGGCTGCTCTTGATGCCTGTC
TCCCGCCTTCCCTCAGTGCTGTGGGGCTCCTGGTATGACCACGTGAGGGGCTGGTGGGAC
GCCAAGGACCGGCACCGCATCCTCTACCTCTTCTACGAGGACATGAAGGAGGTGAGGGCA
TGCTGCCACCATCATATGCCCAATCCCCCCCCACCCCCTTTCCAGATCAGCTTTATCCTC
AGGCCCTATAACCACTTTTTAAAAAAATCTTCTAATTATTCTTTGCTTCTGTTCACAATT
TCAAGAAGATCTGGAAACATCACATTTTATGATCACTTTTTCTTTTTTTCTTTTCTTTTT
TTTTTTTTTTTC------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
TAAGGATCCGGTGTTGCCATGACACATGATTCACTTGGGAACCTCCATATGACGCAGGTG
TAGCCCTAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|3004922|gb|AAC17740.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|3004922|gb|AAC17740.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               65-263, gnl|bosTau2|chr11 (32007073-32006875)
               

               
               65-263, gnl|Hg17|chr2 (108322170-108322341)
               

               
               65-263, gnl|Mm7|chr17 (52130703-52130509)
               


               
               606-730, gnl|bosTau2|chr11 (31994557-31994432)
               

               
               606-730, gnl|Hg17|chr2 (108333701-108333812)
               

               
               606-730, gnl|Mm7|chr17 (52120692-52120569)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               65-263, gnl|bosTau2|chr11 (32007073-32006875)
               

               
               65-263, gnl|Hg17|chr2 (108322170-108322341)
               

               
               65-263, gnl|Mm7|chr17 (52130703-52130509)
               


               
               606-730, gnl|bosTau2|chr11 (31994557-31994432)
               

               
               606-730, gnl|Hg17|chr2 (108333701-108333812)
               

               
               606-730, gnl|Mm7|chr17 (52120692-52120569)

	65-263, gnl\|bosTau2\|chr11 (32007073-32006875)
	65-263, gnl\|Hg17\|chr2 (108322170-108322341)
	65-263, gnl\|Mm7\|chr17 (52130703-52130509)

	606-730, gnl\|bosTau2\|chr11 (31994557-31994432)
	606-730, gnl\|Hg17\|chr2 (108333701-108333812)
	606-730, gnl\|Mm7\|chr17 (52120692-52120569)