Non-Coding RNA Search

Ss1.1-Pig3-SRG8022L07.3

Sequence:


               
               CGCGGCCTCCATTCACAGGGAGCTCCTCGGCATCTGCAGTGACCCCTACACACTGGCTCA
TCAGCTGACCCATGTGGAGCTGGAACGGCTACGACACATTGGACCTGAGGAGTTTGTCCA
GGCTTTTGTGAACAAGGACCCTCTGGCCAGCACAAAGGTAGAAGGCTCTTGGGTGGACTG
TCCCATCAGTGACCCCTGCTCACTCACGAGAATCCCTGGAGCATCAGCTGAGCCAGCTTG
GGAGGGGCCCAGAGCAGAGCAGATAGGCTTAGAGGGGCCATGCTGGCTCCACCCAAGCCC
CTAGCCCAAGGCCTTCGCACCCCAGAAGCCCTGAATCCCAGGGAAGGCCTGGTAGGGTGG
AATATCCCTGGCCCAGTCACTTACCCAGCCAGGCTGAAGGGGCTGGCAGGGAGCCCAGGC
CCTGGTTGGGTATGAGGGTGGAGGACACAACGGGTGTTCCAAGCCCGGGAATGCCCTCCT
GGTGCGTTTCAGTGGGCGCCTGTGCCCTCTAGTGGCCGCTCTGGGGGAGCGCAGACTGGT
GTGTGCAGCTCAAGGAACGTTAAGGGCCTCTGAAGGTGGGCCAGGTGCTCAGGACAGGGT
CCACACACCGAGTCTCAGACCCACCCCTCTCCTCTCAGAGCCCAACCAACAGTTTGCCTG
CTGCTAATCAAGGAGTTAAATTCAAACCAGAATTGGAAACATGTCTTCTACCCTCGACCC
TAATAAATGTGCAAACTAAATATGCAATTGGCGTTTCACCTCTTGGATAAGCAAAGATTA
AACACAGTGGGTGTGTATGTGTAGGGAAAAGGACACGCTATACATGGGGGCAGGGGGTGA
AATTGGCACAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCGGCCTCCATTCACAGGGAGCTCCTCGGCATCTGCAGTGACCCCTACACACTGGCTCA
TCAGCTGACCCATGTGGAGCTGGAACGGCTACGACACATTGGACCTGAGGAGTTTGTCCA
GGCTTTTGTGAACAAGGACCCTCTGGCCAGCACAAAGGTAGAAGGCTCTTGGGTGGACTG
TCCCATCAGTGACCCCTGCTCACTCACGAGAATCCCTGGAGCATCAGCTGAGCCAGCTTG
GGAGGGGCCCAGAGCAGAGCAGATAGGCTTAGAGGGGCCATGCTGGCTCCACCCAAGCCC
CTAGCCCAAGGCCTTCGCACCCCAGAAGCCCTGAATCCCAGGGAAGGCCTGGTAGGGTGG
AATATCCCTGGCCCAGTCACTTACCCAGCCAGGCTGAAGGGGCTGGCAGGGAGCCCAGGC
CCTGGTTGGGTATGAGGGTGGAGGACACAACGGGTGTTCCAAGCCCGGGAATGCCCTCCT
GGTGCGTTTCAGTGGGCGCCTGTGCCCTCTAGTGGCCGCTCTGGGGGAGCGCAGACTGGT
GTGTGCAGCTCAAGGAACGTTAAGGGCCTCTGAAGGTGGGCCAGGTGCTCAGGACAGGGT
CCACACACCGAGTCTCAGACCCACCCCTCTCCTCTCAGAGCCCAACCAACAGTTTGCCTG
CTGCTAATCAAGGAGTTAAATTCAAACCAGAATTGGAAACATGTCTTCTACCCTCGACCC
TAATAAATGTGCAAACTAAATATGCAATTGGCGTTTCACCTCTTGGATAAGCAAAGATTA
AACACAGTGGGTGTGTATGTGTAGGGAAAAGGACACGCTATACATGGGGGCAGGGGGTGA
AATTGGCACAGC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               118-595, + strand, RNAz p=0.999826

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               118-595, + strand, RNAz p=0.999826

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               249-313, - strand, RNAmicro p=0.991387
               

               
               220-296, + strand, RNAmicro p=0.990654

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               249-313, - strand, RNAmicro p=0.991387
               

               
               220-296, + strand, RNAmicro p=0.990654

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               79-802, gnl|bosTau2|chr7 (712894-713616)
               

               
               79-802, gnl|Hg17|chr5 (179487293-179486557)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               79-802, gnl|bosTau2|chr7 (712894-713616)
               

               
               79-802, gnl|Hg17|chr5 (179487293-179486557)

	249-313, - strand, RNAmicro p=0.991387
	220-296, + strand, RNAmicro p=0.990654

	79-802, gnl\|bosTau2\|chr7 (712894-713616)
	79-802, gnl\|Hg17\|chr5 (179487293-179486557)