Non-Coding RNA Search

Ss1.1-Pig3-SRG8022M03.5

Sequence:


               
               GCGGCTCGAGCAGAATGCGGGGTTGGCTCCTTCTCTGAAGAGGAAATTAATTTCGAGGAC
AGCTAGAGGTTCCTCTGGCCCCCTGCTGAAGGTCTATCCTGAAAATTGTGTTTAGGCAAA
TTTTGTGTTAGAGGAAATTTGTTGCTGCTGTTTTTCAAGATGATTGCAACACCTTTGAAA
CATCCAGGAACTCACTTGTCTTCAGTGACTTCTTTTCAAAGGAGAAATATGCCCATGCAT
GCAATCTTTTTTGACAGCATTCCTTCAAGCACACTTACTCCTGTAAAAGATTTGGCAAAA
TATCAGAAGTCCTCTTTAAAACTGAATAACCATAAAGAGAGTCCGTTCCTAGAAAAGACA
ATTTTTAATAATAAAAATATATTCCAATCTACTATGCTAGCAGAGGCTACTGCCTCTAAC
AGTTCTCTTGATATCAGTGCCATAAAGCCCAAAAAGGATGGATTAAAAAATAAAGCCAGC
TATGAATCACCAGGAAAAATATTTCAAAGAATGAAAGATAAAGTACTTCGTAACAAGCAA
GAACAAGCATCAAGAAACAGTAGTTTGTTGGAACCACCAAGAAATGAAAGTAATAAAATT
TTTACTTCTAACGGTGCTGAGGAAAGATTATTACAGCATACCTACCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGCTCGAGCAGAATGCGGGGTTGGCTCCTTCTCTGAAGAGGAAATTAATTTCGAGGAC
AGCTAGAGGTTCCTCTGGCCCCCTGCTGAAGGTCTATCCTGAAAATTGTGTTTAGGCAAA
TTTTGTGTTAGAGGAAATTTGTTGCTGCTGTTTTTCAAGATGATTGCAACACCTTTGAAA
CATCCAGGAACTCACTTGTCTTCAGTGACTTCTTTTCAAAGGAGAAATATGCCCATGCAT
GCAATCTTTTTTGACAGCATTCCTTCAAGCACACTTACTCCTGTAAAAGATTTGGCAAAA
TATCAGAAGTCCTCTTTAAAACTGAATAACCATAAAGAGAGTCCGTTCCTAGAAAAGACA
ATTTTTAATAATAAAAATATATTCCAATCTACTATGCTAGCAGAGGCTACTGCCTCTAAC
AGTTCTCTTGATATCAGTGCCATAAAGCCCAAAAAGGATGGATTAAAAAATAAAGCCAGC
TATGAATCACCAGGAAAAATATTTCAAAGAATGAAAGATAAAGTACTTCGTAACAAGCAA
GAACAAGCATCAAGAAACAGTAGTTTGTTGGAACCACCAAGAAATGAAAGTAATAAAATT
TTTACTTCTAACGGTGCTGAGGAAAGATTATTACAGCATACCTACCTC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|7023694|dbj|BAA92055.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|7023694|dbj|BAA92055.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               163-322, - strand, RNAz p=0.997627
               

               
               198-313, - strand, RNAz p=0.985181

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               163-322, - strand, RNAz p=0.997627
               

               
               198-313, - strand, RNAz p=0.985181

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               44-648, gnl|bosTau2|chr21 (37332900-37332308)
               

               
               44-648, gnl|canFam2|chr8 (25673727-25674285)
               

               
               44-648, gnl|echTel1|scaffold_258237 (6958-6401)
               

               
               44-648, gnl|hg17|chr14 (44785713-44786276)
               

               
               44-648, gnl|Hg17|chr14 (44786355-44785751)
               

               
               44-648, gnl|loxAfr1|scaffold_133436 (5332-5889)
               

               
               44-648, gnl|mm7|chr12 (63100510-63101064)
               

               
               44-648, gnl|Mm7|chr12 (63101136-63100542)
               

               
               44-648, gnl|monDom2|scaffold_1 (66324906-66325526)
               

               
               44-648, gnl|oryCun1|scaffold_180516 (12229-11678)
               

               
               44-648, gnl|panTro1|chr15 (44043906-44044469)
               

               
               44-648, gnl|rheMac2|chr7 (108429487-108430050)
               

               
               44-648, gnl|rn3|chr6 (86518688-86519236)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               44-648, gnl|bosTau2|chr21 (37332900-37332308)
               

               
               44-648, gnl|canFam2|chr8 (25673727-25674285)
               

               
               44-648, gnl|echTel1|scaffold_258237 (6958-6401)
               

               
               44-648, gnl|hg17|chr14 (44785713-44786276)
               

               
               44-648, gnl|Hg17|chr14 (44786355-44785751)
               

               
               44-648, gnl|loxAfr1|scaffold_133436 (5332-5889)
               

               
               44-648, gnl|mm7|chr12 (63100510-63101064)
               

               
               44-648, gnl|Mm7|chr12 (63101136-63100542)
               

               
               44-648, gnl|monDom2|scaffold_1 (66324906-66325526)
               

               
               44-648, gnl|oryCun1|scaffold_180516 (12229-11678)
               

               
               44-648, gnl|panTro1|chr15 (44043906-44044469)
               

               
               44-648, gnl|rheMac2|chr7 (108429487-108430050)
               

               
               44-648, gnl|rn3|chr6 (86518688-86519236)

	163-322, - strand, RNAz p=0.997627
	198-313, - strand, RNAz p=0.985181

	44-648, gnl\|bosTau2\|chr21 (37332900-37332308)
	44-648, gnl\|canFam2\|chr8 (25673727-25674285)
	44-648, gnl\|echTel1\|scaffold_258237 (6958-6401)
	44-648, gnl\|hg17\|chr14 (44785713-44786276)
	44-648, gnl\|Hg17\|chr14 (44786355-44785751)
	44-648, gnl\|loxAfr1\|scaffold_133436 (5332-5889)
	44-648, gnl\|mm7\|chr12 (63100510-63101064)
	44-648, gnl\|Mm7\|chr12 (63101136-63100542)
	44-648, gnl\|monDom2\|scaffold_1 (66324906-66325526)
	44-648, gnl\|oryCun1\|scaffold_180516 (12229-11678)
	44-648, gnl\|panTro1\|chr15 (44043906-44044469)
	44-648, gnl\|rheMac2\|chr7 (108429487-108430050)
	44-648, gnl\|rn3\|chr6 (86518688-86519236)