Ss1.1-Pig3-SRG8022M19.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GACTTGCGCCCCTGGCTGGGCGTGTTTTGGCAACAGAGTGCCTGACCTGGGTCAGGATTC TCACGAAAGACATGTCTGACAAGATGTCTAGTTTCCTCCATATCGGAGACATTAGTTCTC TGTACGCCGAGGGATCGACAAATGGATTTATTATCACCTTGGGCCTGGTTGATGATCGCT GTGTCGTACAGCCAGAAGCCGGGGACCTTAACAATCCACCCAAGAAATTCAGAGATTGCC TCTTTAAGCTATGTCCCATGAATCGATACTCTGCCCATAAGCAGTTCTGGAAAGCTGCTA AGCCGGGAGCCAACAGCACAACAGACGCAGTACTGCTCAACAAATTGCACCATGCTGCAG ACCTGGAAAAGAAGCAGAATGAGACAGAAAACAGGAAACTGCTGGGGACCGTGATCCACT ATGGCAATGTGATCCAGCTCTTGCATTTGAAAAGCAACAAATACCTAACTGTGAATAAGA TGCTGCCAGCGCTGCTGGAGAAGAATGCCATGATAGTGACATTGGATGAAGCTGGAAACG AGGGGTCCTGGTTTTACATTCAGCCATTCTACAAGCTGAGATCCATCGGAGACAGTGTGG TGATAGGTGACAAGGTTGTTCTGAACCCAGTGAATGCCGGCCAGCCCCTCCATGCCAGCA GCCATCAGATGGTGGACAACTCAGGCTGCAACGAGGTCAATTCCGTCAAGTGCAATACAA GTTGGAAAATAGTCCTTTTCATGAAATGGAGTGATACCAAAGATGACATATTAAAGGGGG GTGACGTGGTGAGGCTGTTCCATGCCGAGCAGGAGAAGTTCCTCACCTGTGATGAGCACA GTAAGAAGCAGCATGTTTTCATGAGAACCAGTGGCCGGCAGTCAGCCACATCTGCCACGA GTTCCAAAGCCTTGTGGGAGGTGGAGGTGGTCCAACACGATCCATGTCGGGGTGGAGCTG GATATTGGAACAGCCTCTTCCGTTTCAAGCATCTTGCTACAGGGCATTACTTAGCAGCAG AGGTAGACCCTGACTTTGAGGAAGAATGCCTGGAGTTTCAGCCCTCAGTGGACCCAGACC AGGATGCCTCCCGCAGCAGGTTGCGAAACGCCCAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GACTTGCGCCCCTGGCTGGGCGTGTTTTGGCAACAGAGTGCCTGACCTGGGTCAGGATTC TCACGAAAGACATGTCTGACAAGATGTCTAGTTTCCTCCATATCGGAGACATTAGTTCTC TGTACGCCGAGGGATCGACAAATGGATTTATTATCACCTTGGGCCTGGTTGATGATCGCT GTGTCGTACAGCCAGAAGCCGGGGACCTTAACAATCCACCCAAGAAATTCAGAGATTGCC TCTTTAAGCTATGTCCCATGAATCGATACTCTGCCCATAAGCAGTTCTGGAAAGCTGCTA AGCCGGGAGCCAACAGCACAACAGACGCAGTACTGCTCAACAAATTGCACCATGCTGCAG ACCTGGAAAAGAAGCAGAATGAGACAGAAAACAGGAAACTGCTGGGGACCGTGATCCACT ATGGCAATGTGATCCAGCTCTTGCATTTGAAAAGCAACAAATACCTAACTGTGAATAAGA TGCTGCCAGCGCTGCTGGAGAAGAATGCCATGATAGTGACATTGGATGAAGCTGGAAACG AGGGGTCCTGGTTTTACATTCAGCCATTCTACAAGCTGAGATCCATCGGAGACAGTGTGG TGATAGGTGACAAGGTTGTTCTGAACCCAGTGAATGCCGGCCAGCCCCTCCATGCCAGCA GCCATCAGATGGTGGACAACTCAGGCTGCAACGAGGTCAATTCCGTCAAGTGCAATACAA GTTGGAAAATAGTCCTTTTCATGAAATGGAGTGATACCAAAGATGACATATTAAAGGGGG GTGACGTGGTGAGGCTGTTCCATGCCGAGCAGGAGAAGTTCCTCACCTGTGATGAGCACA GTAAGAAGCAGCATGTTTTCATGAGAACCAGTGGCCGGCAGTCAGCCACATCTGCCACGA GTTCCAAAGCCTTGTGGGAGGTGGAGGTGGTCCAACACGATCCATGTCGGGGTGGAGCTG GATATTGGAACAGCCTCTTCCGTTTCAAGCATCTTGCTACAGGGCATTACTTAGCAGCAG AGGTAGACCCTGACTTTGAGGAAGAATGCCTGGAGTTTCAGCCCTCAGTGGACCCAGACC AGGATGCCTCCCGCAGCAGGTTGCGAAACGCCCAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 779-897, + strand, RNAz p=0.809616 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 779-897, + strand, RNAz p=0.809616 |
| Aligned organism(s): 47 entry(ies) | More info |
| Aligned organism(s): 47 entry(ies) | Help | Less info |
| 54-163, gnl|bosTau2|chr22 (16733458-16733567) | |
| 54-163, gnl|Hg17|chr3 (4533158-4533267) | |
| 54-163, gnl|Mm7|chr6 (108331014-108331123) | |
| 233-350, gnl|bosTau2|chr22 (16835679-16835796) | |
| 233-350, gnl|canFam2|chr20 (15950981-15950830) | |
| 233-350, gnl|danRer3|chr6 (20345873-20345735) | |
| 233-350, gnl|dasNov1|scaffold_7484 (19628-19478) | |
| 233-350, gnl|echTel1|scaffold_320151 (83168-83022) | |
| 233-350, gnl|fr1|chrUn (146434028-146434171) | |
| 233-350, gnl|galGal2|chr12 (18364779-18364931) | |
| 233-350, gnl|hg17|chr3 (4644433-4644584) | |
| 233-350, gnl|Hg17|chr3 (4644445-4644562) | |
| 233-350, gnl|loxAfr1|scaffold_3855 (56653-56803) | |
| 233-350, gnl|mm7|chr6 (108433531-108433677) | |
| 233-350, gnl|Mm7|chr6 (108433543-108433660) | |
| 233-350, gnl|monDom2|scaffold_5 (30314798-30314949) | |
| 233-350, gnl|oryCun1|scaffold_104584 (4927-5073) | |
| 233-350, gnl|panTro1|chr2 (4762246-4762397) | |
| 233-350, gnl|rheMac2|chr2 (56401312-56401161) | |
| 233-350, gnl|rn3|chr4 (144065689-144065835) | |
| 233-350, gnl|tetNig1|chr11 (9516449-9516320) | |
| 233-350, gnl|xenTro1|scaffold_173 (1749496-1749628) | |
| 434-604, gnl|bosTau2|chr23 (6165314-6165484) | |
| 434-604, gnl|Hg17|chr6 (33734421-33734593) | |
| 434-604, gnl|Mm7|chr17 (25272216-25272386) | |
| 435-598, gnl|bosTau2|chr22 (16846614-16846777) | |
| 435-598, gnl|Hg17|chr3 (4658774-4658937) | |
| 435-598, gnl|Mm7|chr6 (108446028-108446191) | |
| 779-928, gnl|bosTau2|chr22 (16850261-16850410) | |
| 779-928, gnl|canFam2|chr20 (15935823-15935615) | |
| 779-928, gnl|danRer3|chr6 (20339666-20339494) | |
| 779-928, gnl|dasNov1|scaffold_7484 (3398-3185) | |
| 779-928, gnl|echTel1|scaffold_280398 (36697-36501) | |
| 779-928, gnl|fr1|chrUn (146436579-146436766) | |
| 779-928, gnl|galGal2|chr12 (18370775-18370956) | |
| 779-928, gnl|hg17|chr3 (4662229-4662428) | |
| 779-928, gnl|Hg17|chr3 (4662265-4662414) | |
| 779-928, gnl|loxAfr1|scaffold_3855 (74642-74840) | |
| 779-928, gnl|mm7|chr6 (108450386-108450591) | |
| 779-928, gnl|Mm7|chr6 (108450428-108450577) | |
| 779-928, gnl|monDom2|scaffold_5 (30326867-30327065) | |
| 779-928, gnl|oryCun1|scaffold_113546 (1112-928) | |
| 779-928, gnl|panTro1|chr2 (4780075-4780274) | |
| 779-928, gnl|rheMac2|chr2 (56383425-56383226) | |
| 779-928, gnl|rn3|chr4 (144082777-144082977) | |
| 779-928, gnl|tetNig1|chr11 (9514313-9514122) | |
| 779-928, gnl|xenTro1|scaffold_173 (1759072-1759253) |
| Aligned organism(s): 47 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 54-163, gnl|bosTau2|chr22 (16733458-16733567) | |
| 54-163, gnl|Hg17|chr3 (4533158-4533267) | |
| 54-163, gnl|Mm7|chr6 (108331014-108331123) | |
| 233-350, gnl|bosTau2|chr22 (16835679-16835796) | |
| 233-350, gnl|canFam2|chr20 (15950981-15950830) | |
| 233-350, gnl|danRer3|chr6 (20345873-20345735) | |
| 233-350, gnl|dasNov1|scaffold_7484 (19628-19478) | |
| 233-350, gnl|echTel1|scaffold_320151 (83168-83022) | |
| 233-350, gnl|fr1|chrUn (146434028-146434171) | |
| 233-350, gnl|galGal2|chr12 (18364779-18364931) | |
| 233-350, gnl|hg17|chr3 (4644433-4644584) | |
| 233-350, gnl|Hg17|chr3 (4644445-4644562) | |
| 233-350, gnl|loxAfr1|scaffold_3855 (56653-56803) | |
| 233-350, gnl|mm7|chr6 (108433531-108433677) | |
| 233-350, gnl|Mm7|chr6 (108433543-108433660) | |
| 233-350, gnl|monDom2|scaffold_5 (30314798-30314949) | |
| 233-350, gnl|oryCun1|scaffold_104584 (4927-5073) | |
| 233-350, gnl|panTro1|chr2 (4762246-4762397) | |
| 233-350, gnl|rheMac2|chr2 (56401312-56401161) | |
| 233-350, gnl|rn3|chr4 (144065689-144065835) | |
| 233-350, gnl|tetNig1|chr11 (9516449-9516320) | |
| 233-350, gnl|xenTro1|scaffold_173 (1749496-1749628) | |
| 434-604, gnl|bosTau2|chr23 (6165314-6165484) | |
| 434-604, gnl|Hg17|chr6 (33734421-33734593) | |
| 434-604, gnl|Mm7|chr17 (25272216-25272386) | |
| 435-598, gnl|bosTau2|chr22 (16846614-16846777) | |
| 435-598, gnl|Hg17|chr3 (4658774-4658937) | |
| 435-598, gnl|Mm7|chr6 (108446028-108446191) | |
| 779-928, gnl|bosTau2|chr22 (16850261-16850410) | |
| 779-928, gnl|canFam2|chr20 (15935823-15935615) | |
| 779-928, gnl|danRer3|chr6 (20339666-20339494) | |
| 779-928, gnl|dasNov1|scaffold_7484 (3398-3185) | |
| 779-928, gnl|echTel1|scaffold_280398 (36697-36501) | |
| 779-928, gnl|fr1|chrUn (146436579-146436766) | |
| 779-928, gnl|galGal2|chr12 (18370775-18370956) | |
| 779-928, gnl|hg17|chr3 (4662229-4662428) | |
| 779-928, gnl|Hg17|chr3 (4662265-4662414) | |
| 779-928, gnl|loxAfr1|scaffold_3855 (74642-74840) | |
| 779-928, gnl|mm7|chr6 (108450386-108450591) | |
| 779-928, gnl|Mm7|chr6 (108450428-108450577) | |
| 779-928, gnl|monDom2|scaffold_5 (30326867-30327065) | |
| 779-928, gnl|oryCun1|scaffold_113546 (1112-928) | |
| 779-928, gnl|panTro1|chr2 (4780075-4780274) | |
| 779-928, gnl|rheMac2|chr2 (56383425-56383226) | |
| 779-928, gnl|rn3|chr4 (144082777-144082977) | |
| 779-928, gnl|tetNig1|chr11 (9514313-9514122) | |
| 779-928, gnl|xenTro1|scaffold_173 (1759072-1759253) |