Non-Coding RNA Search

Ss1.1-Pig3-SRG8022P05.5

Sequence:


               
               TGTTTTGCTTTGTATAATCGCATCCTTCCTCTGGCTGGTTTAAAATGGGGCGGGGGTGGG
AGGATGGGGAAAGGTGTGCTGGAAGGGAATCCTCATTGGCTTTGATATGTCAGTGAGATT
CCCATAGCCTGGATTTCATAATTCAAGCGCATCCCCTATGATCATCCGGATAGACCGTGC
CCGGGGGCAGAGGATTTGCTTCTAAAAGTAGAGCAGGAGCCATCGTATACTCGGGGAGGT
TGGTGTATGAGCCAAGACCCATGAGTCGGGTCACCTTTGCGAAGGGTGGGAATTTCACAG
GTCTCCGAGTCTCTGATGGTTGTTATTTTATTTGTAAATTAAGAAGTAGGCGCCCCCAGC
TCTCGGGCTTACTTAGGGATTAGCATATGCAAAAGTCGACCCTCCGGTGGTGGTGCTTTC
TTATCCATCCCTCCCCAGATATCTGGTTTTTGATTGCAGAACCCACTACCTTTTTCTTTT
TAGCCATTTAAAATGATAGTTAATAATGTCACATTAGGACAGATCCCCTTCTTGCAAATG
AAGGCTGGGTTGGGACTTGTGCCATGTCACCCTCAAGTATGAAGTGTAAACTCTTTTCTT
GGGCCACCAAAGTAACTAAACAAGAAATGCGACATTCTCCCTTCAGAGTGCTTTGGAGTT
ATGACTGTGGCTATGTTTGGAAAATTAGCGTAGCTCGTAAAAGCCAAATGCAGAAAATGA
ATTGTTTAGCATTCTGTCTTACAGCTCCACACCCCCACCCCCCACTCCTTTAAGGAAAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTTTTGCTTTGTATAATCGCATCCTTCCTCTGGCTGGTTTAAAATGGGGCGGGGGTGGG
AGGATGGGGAAAGGTGTGCTGGAAGGGAATCCTCATTGGCTTTGATATGTCAGTGAGATT
CCCATAGCCTGGATTTCATAATTCAAGCGCATCCCCTATGATCATCCGGATAGACCGTGC
CCGGGGGCAGAGGATTTGCTTCTAAAAGTAGAGCAGGAGCCATCGTATACTCGGGGAGGT
TGGTGTATGAGCCAAGACCCATGAGTCGGGTCACCTTTGCGAAGGGTGGGAATTTCACAG
GTCTCCGAGTCTCTGATGGTTGTTATTTTATTTGTAAATTAAGAAGTAGGCGCCCCCAGC
TCTCGGGCTTACTTAGGGATTAGCATATGCAAAAGTCGACCCTCCGGTGGTGGTGCTTTC
TTATCCATCCCTCCCCAGATATCTGGTTTTTGATTGCAGAACCCACTACCTTTTTCTTTT
TAGCCATTTAAAATGATAGTTAATAATGTCACATTAGGACAGATCCCCTTCTTGCAAATG
AAGGCTGGGTTGGGACTTGTGCCATGTCACCCTCAAGTATGAAGTGTAAACTCTTTTCTT
GGGCCACCAAAGTAACTAAACAAGAAATGCGACATTCTCCCTTCAGAGTGCTTTGGAGTT
ATGACTGTGGCTATGTTTGGAAAATTAGCGTAGCTCGTAAAAGCCAAATGCAGAAAATGA
ATTGTTTAGCATTCTGTCTTACAGCTCCACACCCCCACCCCCCACTCCTTTAAGGAAAAG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               557-676, - strand, RNAz p=0.887275

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               557-676, - strand, RNAz p=0.887275

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               1-763, gnl|bosTau2|chr6 (19550037-19550789)
               

               
               1-763, gnl|canFam2|chr4 (41197050-41196401)
               

               
               1-763, gnl|dasNov1|scaffold_4858 (13297-13940)
               

               
               1-763, gnl|echTel1|scaffold_308604 (83199-83852)
               

               
               1-763, gnl|hg17|chr5 (174086680-174087380)
               

               
               1-763, gnl|Hg17|chr5 (174086849-174087639)
               

               
               1-763, gnl|loxAfr1|scaffold_25138 (2920-3585)
               

               
               1-763, gnl|mm7|chr13 (52506034-52505423)
               

               
               1-763, gnl|Mm7|chr13 (52505876-52505202)
               

               
               1-763, gnl|oryCun1|scaffold_211452 (3325-2677)
               

               
               1-763, gnl|panTro1|chr4 (181483445-181484147)
               

               
               1-763, gnl|rheMac2|chr6 (171147048-171147740)
               

               
               1-763, gnl|rn3|chr17 (17245579-17246124)

Aligned organism(s): 13 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-763, gnl|bosTau2|chr6 (19550037-19550789)
               

               
               1-763, gnl|canFam2|chr4 (41197050-41196401)
               

               
               1-763, gnl|dasNov1|scaffold_4858 (13297-13940)
               

               
               1-763, gnl|echTel1|scaffold_308604 (83199-83852)
               

               
               1-763, gnl|hg17|chr5 (174086680-174087380)
               

               
               1-763, gnl|Hg17|chr5 (174086849-174087639)
               

               
               1-763, gnl|loxAfr1|scaffold_25138 (2920-3585)
               

               
               1-763, gnl|mm7|chr13 (52506034-52505423)
               

               
               1-763, gnl|Mm7|chr13 (52505876-52505202)
               

               
               1-763, gnl|oryCun1|scaffold_211452 (3325-2677)
               

               
               1-763, gnl|panTro1|chr4 (181483445-181484147)
               

               
               1-763, gnl|rheMac2|chr6 (171147048-171147740)
               

               
               1-763, gnl|rn3|chr17 (17245579-17246124)

	1-763, gnl\|bosTau2\|chr6 (19550037-19550789)
	1-763, gnl\|canFam2\|chr4 (41197050-41196401)
	1-763, gnl\|dasNov1\|scaffold_4858 (13297-13940)
	1-763, gnl\|echTel1\|scaffold_308604 (83199-83852)
	1-763, gnl\|hg17\|chr5 (174086680-174087380)
	1-763, gnl\|Hg17\|chr5 (174086849-174087639)
	1-763, gnl\|loxAfr1\|scaffold_25138 (2920-3585)
	1-763, gnl\|mm7\|chr13 (52506034-52505423)
	1-763, gnl\|Mm7\|chr13 (52505876-52505202)
	1-763, gnl\|oryCun1\|scaffold_211452 (3325-2677)
	1-763, gnl\|panTro1\|chr4 (181483445-181484147)
	1-763, gnl\|rheMac2\|chr6 (171147048-171147740)
	1-763, gnl\|rn3\|chr17 (17245579-17246124)