Non-Coding RNA Search

Ss1.1-Pig3-SRG8022P18.5

Sequence:


               
               TCACACACGCTCGGGGCAGCCTCCCCGTTCATGAGGCCAACAGTGCCACATCCTGAGCGA
GCGGCTAAGCAGCGCATACAAAGAGCTCTCACTTGTGAGTGAGAAAAGCAAGCATAAGGA
GAAGCAGAAGCACCAGCATGGTGAAACCGGCCACAAATCTTCCAAGAACAGCTTTGAAGT
GGACACCCTGTCCACACTGTCCCTTTCAGATGCCCAGCATTGGACGCAGGCCAAGGACAA
AGGTGACTTGAGCAGTGAGCCTGCAGACTCGTGCACCAAAAGGTACTCCAGCAGTGGCGG
GGACGGCAGCAGCACGAGACCGGAGACCCTGGATGTGTTCGGTGAGATGAACCCTCCGAA
TGACAAGTGGGACAGTGATGTGAGTGGGAGCAAAAGGAGGAGCTATGAAGGCTTCGGGAC
GTACAGGGAGAAAGACATCCAAGCCTTCAAGGTGAACCGCAAGGAGAGAAGTTCCTATGA
GTCCTCCCTATCTCCAGGGCTACCAAGTCCCCACTTAAAAGTGGACCAAACAGCAACGCA
TGGTAAGAATGAGAGCTCAGCAACCACCATGATGACCAGGAAGAAGCCAGCCACAGTGGA
CAGTGTTGCAATTCCACCAGCCCCAGTGTTATCTCTCCTTGCTGCATATGCAGCAACGTC
GGACGCAGCCAGTTCCTCCTTGAAGAAGCGATTCAAGCGGCGGGAGATCGAGGCCATCCA
GTGCGAGGTGCGGAAGATGTGCAACTACACCAAGATTCTGTCCACCAAGAAGAACCTAGA
CCACGTGAACAAGATCCTGAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCACACACGCTCGGGGCAGCCTCCCCGTTCATGAGGCCAACAGTGCCACATCCTGAGCGA
GCGGCTAAGCAGCGCATACAAAGAGCTCTCACTTGTGAGTGAGAAAAGCAAGCATAAGGA
GAAGCAGAAGCACCAGCATGGTGAAACCGGCCACAAATCTTCCAAGAACAGCTTTGAAGT
GGACACCCTGTCCACACTGTCCCTTTCAGATGCCCAGCATTGGACGCAGGCCAAGGACAA
AGGTGACTTGAGCAGTGAGCCTGCAGACTCGTGCACCAAAAGGTACTCCAGCAGTGGCGG
GGACGGCAGCAGCACGAGACCGGAGACCCTGGATGTGTTCGGTGAGATGAACCCTCCGAA
TGACAAGTGGGACAGTGATGTGAGTGGGAGCAAAAGGAGGAGCTATGAAGGCTTCGGGAC
GTACAGGGAGAAAGACATCCAAGCCTTCAAGGTGAACCGCAAGGAGAGAAGTTCCTATGA
GTCCTCCCTATCTCCAGGGCTACCAAGTCCCCACTTAAAAGTGGACCAAACAGCAACGCA
TGGTAAGAATGAGAGCTCAGCAACCACCATGATGACCAGGAAGAAGCCAGCCACAGTGGA
CAGTGTTGCAATTCCACCAGCCCCAGTGTTATCTCTCCTTGCTGCATATGCAGCAACGTC
GGACGCAGCCAGTTCCTCCTTGAAGAAGCGATTCAAGCGGCGGGAGATCGAGGCCATCCA
GTGCGAGGTGCGGAAGATGTGCAACTACACCAAGATTCTGTCCACCAAGAAGAACCTAGA
CCACGTGAACAAGATCCTGAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61863466|ref|XP_614742.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61863466|ref|XP_614742.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               164-283, - strand, RNAz p=0.742354
               

               
               364-498, + strand, RNAz p=0.991142

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               164-283, - strand, RNAz p=0.742354
               

               
               364-498, + strand, RNAz p=0.991142

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               45-498, gnl|bosTau2|chr24 (32470096-32469643)
               

               
               45-498, gnl|Hg17|chr18 (40786851-40787304)
               

               
               45-498, gnl|Mm7|chr18 (79142407-79141960)
               


               
               665-801, gnl|bosTau2|chr24 (35764296-35764432)
               

               
               665-801, gnl|Hg17|chr18 (40897038-40897174)
               

               
               665-801, gnl|Mm7|chr18 (79041326-79041190)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               45-498, gnl|bosTau2|chr24 (32470096-32469643)
               

               
               45-498, gnl|Hg17|chr18 (40786851-40787304)
               

               
               45-498, gnl|Mm7|chr18 (79142407-79141960)
               


               
               665-801, gnl|bosTau2|chr24 (35764296-35764432)
               

               
               665-801, gnl|Hg17|chr18 (40897038-40897174)
               

               
               665-801, gnl|Mm7|chr18 (79041326-79041190)

	164-283, - strand, RNAz p=0.742354
	364-498, + strand, RNAz p=0.991142

	45-498, gnl\|bosTau2\|chr24 (32470096-32469643)
	45-498, gnl\|Hg17\|chr18 (40786851-40787304)
	45-498, gnl\|Mm7\|chr18 (79142407-79141960)

	665-801, gnl\|bosTau2\|chr24 (35764296-35764432)
	665-801, gnl\|Hg17\|chr18 (40897038-40897174)
	665-801, gnl\|Mm7\|chr18 (79041326-79041190)