Non-Coding RNA Search

Ss1.1-Pig3-SRG8023E12.5

Sequence:


               
               TTTTCAGCAACCCAGTCCAGTACTGGGAGATCCATCCATCCACCTTCCGATGTGTCTATG
TGCCTGCTGACGTTCAGCTTGGAAACTACAAGTAGCTCCCAAGAAAACCCTCATTTTTAT
AACCTGGCAAAATCCCATTAATGTCATTGCTGAGAGAGGGCGAAAAACATTTTTTTTTGA
AAACTAGATACTGGAAATCTATCTGCAATGTGGATGTTTTTCCCACATGACTTATTATGC
ATAAAGCCAAATATGCAGTTTAAGTAATTGCTTACAATAAAAAAATATTTTGCCTGCCAT
TTTCAGAATCCTTTTTTGAAGCTTATTATTGATGTTAACTGAGCTATTGCAGATATTCTT
GTTTCACTAAATGTAAAATTTGGAGTAAACAATTTTAGTAGAGCATTTAATTTCCGGAAA
GAATCAAATAAAAATGGTATCAATCTTCTGTAACTCACGGCGGGGGATTAGCTCCATTGA
CATAGTCTAGCAATGTATTCATCCATATTATTATTGATAAAGCCTCATTTGAGTGTGTGA
ATTCAATCCAGGCTATGTAAAATTTTTGCTAATGTCATTGTTTTGAAAAAAATAAATTCA
CAAGTACATTTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTCAGCAACCCAGTCCAGTACTGGGAGATCCATCCATCCACCTTCCGATGTGTCTATG
TGCCTGCTGACGTTCAGCTTGGAAACTACAAGTAGCTCCCAAGAAAACCCTCATTTTTAT
AACCTGGCAAAATCCCATTAATGTCATTGCTGAGAGAGGGCGAAAAACATTTTTTTTTGA
AAACTAGATACTGGAAATCTATCTGCAATGTGGATGTTTTTCCCACATGACTTATTATGC
ATAAAGCCAAATATGCAGTTTAAGTAATTGCTTACAATAAAAAAATATTTTGCCTGCCAT
TTTCAGAATCCTTTTTTGAAGCTTATTATTGATGTTAACTGAGCTATTGCAGATATTCTT
GTTTCACTAAATGTAAAATTTGGAGTAAACAATTTTAGTAGAGCATTTAATTTCCGGAAA
GAATCAAATAAAAATGGTATCAATCTTCTGTAACTCACGGCGGGGGATTAGCTCCATTGA
CATAGTCTAGCAATGTATTCATCCATATTATTATTGATAAAGCCTCATTTGAGTGTGTGA
ATTCAATCCAGGCTATGTAAAATTTTTGCTAATGTCATTGTTTTGAAAAAAATAAATTCA
CAAGTACATTTA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               153-269, - strand, RNAz p=0.929558

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               153-269, - strand, RNAz p=0.929558

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-612, gnl|bosTau2|chr5 (11421403-11422014)
               

               
               1-612, gnl|Hg17|chr12 (90042397-90041777)
               

               
               1-612, gnl|Mm7|chr10 (97080048-97080643)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-612, gnl|bosTau2|chr5 (11421403-11422014)
               

               
               1-612, gnl|Hg17|chr12 (90042397-90041777)
               

               
               1-612, gnl|Mm7|chr10 (97080048-97080643)

	1-612, gnl\|bosTau2\|chr5 (11421403-11422014)
	1-612, gnl\|Hg17\|chr12 (90042397-90041777)
	1-612, gnl\|Mm7\|chr10 (97080048-97080643)