Non-Coding RNA Search

Ss1.1-Pig3-SRG8023F20.3

Sequence:


               
               GGACGCCCAGGAGGGGGACGCGGAGAGGGACTCCAAGAGGCGCAGGCTTGTGTGACGCAG
CCGCCCTGCCCAGTGACACTGGGCACTTTACCTCACTTTGCACTGATTAATTCTAAGCAA
TTGGAAGATTATACTTTGAGATGTTTTGTTTTTAGTTGTCATGGTGACGGAAACAGCTCC
TTCTTGTGTCTTAGGAGACAGCTCAGGGTTCGGGGGGCCCAGGGAGGGGTGAGTGGGCAG
CACTGGGTTTGTTTTATGTTTGATTCCCCGCCAGCTTCTGCAGACCATGCCCCTCTCTGG
GGCCCCTGCACGACCCCCAGGCTCCAGAACGCATGCACGGCCCTGATGCTCTTGTCCACG
TGGCCCTCAAGACCCCCGCCTGTGCCTGGGCCCCACGGTGGGTGCCGGTGGCCCCATCTG
CAGCCCCAGGCTCCGTACATGGCACCCACATTGCAGGGCACCCAGGCCCCACTCCAGCTG
GGGCAGTCCCTGCCTCCAACAGACCACCCCTTTGAAAGGATGGGGCGACTTGGTTCAGGT
TTTATGGAGCAAAAGGAATGTCTGCTCGGGCCCCTCTGAGTTCACTGCAAGTTGAATTAA
ACATGGCTAAACCACATCATAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGACGCCCAGGAGGGGGACGCGGAGAGGGACTCCAAGAGGCGCAGGCTTGTGTGACGCAG
CCGCCCTGCCCAGTGACACTGGGCACTTTACCTCACTTTGCACTGATTAATTCTAAGCAA
TTGGAAGATTATACTTTGAGATGTTTTGTTTTTAGTTGTCATGGTGACGGAAACAGCTCC
TTCTTGTGTCTTAGGAGACAGCTCAGGGTTCGGGGGGCCCAGGGAGGGGTGAGTGGGCAG
CACTGGGTTTGTTTTATGTTTGATTCCCCGCCAGCTTCTGCAGACCATGCCCCTCTCTGG
GGCCCCTGCACGACCCCCAGGCTCCAGAACGCATGCACGGCCCTGATGCTCTTGTCCACG
TGGCCCTCAAGACCCCCGCCTGTGCCTGGGCCCCACGGTGGGTGCCGGTGGCCCCATCTG
CAGCCCCAGGCTCCGTACATGGCACCCACATTGCAGGGCACCCAGGCCCCACTCCAGCTG
GGGCAGTCCCTGCCTCCAACAGACCACCCCTTTGAAAGGATGGGGCGACTTGGTTCAGGT
TTTATGGAGCAAAAGGAATGTCTGCTCGGGCCCCTCTGAGTTCACTGCAAGTTGAATTAA
ACATGGCTAAACCACATCATAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               386-540, - strand, RNAz p=0.994207

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               386-540, - strand, RNAz p=0.994207

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-619, gnl|bosTau2|chr13 (38087759-38087141)
               

               
               1-619, gnl|Hg17|chr20 (56723735-56724304)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-619, gnl|bosTau2|chr13 (38087759-38087141)
               

               
               1-619, gnl|Hg17|chr20 (56723735-56724304)

	1-619, gnl\|bosTau2\|chr13 (38087759-38087141)
	1-619, gnl\|Hg17\|chr20 (56723735-56724304)