Non-Coding RNA Search

Ss1.1-Pig3-SRG8023F23.5

Sequence:


               
               GGCCAGGGCGTTTTTCCCTGCAGGGAGTGTGAGAGGGTCTTCGACAAGATCAAGAGTCGA
AATGCCCACATGAAGCGGCACCGGCTTCAGGACCACATGGAGCCCCTCGTCCGGGTGAAG
TGGCCCGTGAAGCCCTTCCAGCTGAAGGAGGAGGAGGAGGAGGACGAGGAGATGGGCACT
GACATTGGCCCCCTGCCGTGGTGACTCGTGGAGGGCAGCAAGCTGGGATGGGGACCTCCA
GCGCTGTCCCAGCCCCTTTGGCCTCTCCAAGGTCCCCCTCTGCTTCTGTCGTGCCCCCTC
ACTGTCCCCGCTGGCCAGCCAGCTTGCAGAGCCAGCGAGTTTGGCCACAAGTAGGGAGGA
GATGCCCGGTCATCTGATGGCGGTGACGTCCCCGTCGGCTGGGCCCGAGGCGCCCTTCTC
TTTAGGCTCATAGTCTCTCCCGTTCCCGCAGCTCCGCTCCTCCGAGCACAGAGGCCTGGG
AGCCAGCACGTTAGACCCGGGGAGCCCCAGTCTTGGCCTTGGCTTGGGCTTTGGTTACAT
TTGTTAGGTCAGGCCGAGATGCAGAGACTCCACGGGCGGTACTCAGACCTCTGCCGTGTC
GGGGCCCCTCCCGGGGTCTCTGCGTCCCGGGTTCAGTCCCTGCTCTCGCTGTGACTTGTA
CATTGTTAGGTTTTTTTGGTACTTGTCGACTTGTAAATCTTAATAAATGGAGTTCTTAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCCAGGGCGTTTTTCCCTGCAGGGAGTGTGAGAGGGTCTTCGACAAGATCAAGAGTCGA
AATGCCCACATGAAGCGGCACCGGCTTCAGGACCACATGGAGCCCCTCGTCCGGGTGAAG
TGGCCCGTGAAGCCCTTCCAGCTGAAGGAGGAGGAGGAGGAGGACGAGGAGATGGGCACT
GACATTGGCCCCCTGCCGTGGTGACTCGTGGAGGGCAGCAAGCTGGGATGGGGACCTCCA
GCGCTGTCCCAGCCCCTTTGGCCTCTCCAAGGTCCCCCTCTGCTTCTGTCGTGCCCCCTC
ACTGTCCCCGCTGGCCAGCCAGCTTGCAGAGCCAGCGAGTTTGGCCACAAGTAGGGAGGA
GATGCCCGGTCATCTGATGGCGGTGACGTCCCCGTCGGCTGGGCCCGAGGCGCCCTTCTC
TTTAGGCTCATAGTCTCTCCCGTTCCCGCAGCTCCGCTCCTCCGAGCACAGAGGCCTGGG
AGCCAGCACGTTAGACCCGGGGAGCCCCAGTCTTGGCCTTGGCTTGGGCTTTGGTTACAT
TTGTTAGGTCAGGCCGAGATGCAGAGACTCCACGGGCGGTACTCAGACCTCTGCCGTGTC
GGGGCCCCTCCCGGGGTCTCTGCGTCCCGGGTTCAGTCCCTGCTCTCGCTGTGACTTGTA
CATTGTTAGGTTTTTTTGGTACTTGTCGACTTGTAAATCTTAATAAATGGAGTTCTTAAG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               451-566, + strand, RNAz p=0.677251

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               451-566, + strand, RNAz p=0.677251

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               460-509, + strand, RNAmicro p=0.923034

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               460-509, + strand, RNAmicro p=0.923034

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AL833862, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AL833862, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               34-720, gnl|bosTau2|chr18 (47477817-47477142)
               

               
               34-720, gnl|Hg17|chr19 (52716448-52715758)
               

               
               34-720, gnl|Mm7|chr7 (13858093-13858730)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               34-720, gnl|bosTau2|chr18 (47477817-47477142)
               

               
               34-720, gnl|Hg17|chr19 (52716448-52715758)
               

               
               34-720, gnl|Mm7|chr7 (13858093-13858730)

	34-720, gnl\|bosTau2\|chr18 (47477817-47477142)
	34-720, gnl\|Hg17\|chr19 (52716448-52715758)
	34-720, gnl\|Mm7\|chr7 (13858093-13858730)