Non-Coding RNA Search

Ss1.1-Pig3-SRG8023G15.3

Sequence:


               
               CCTGAATGGAGGTTTGCTCCGAGGAATTGAGATCTTGAACAAAGCTCACGGCAGCCTCCC
ATAATTCAGCAACCGTGCCTCAATTCTCATCATGTTGACAGATGGCGAGCCCACGGAGGG
TAAGCGCCCGAAGGGCTACCTTGGGAGGTGGTGATCTCTTCATTATCAAAGGCATTCAAG
CTGAACTTGGAAATTCAACCACTGAGGATGTTGTCAGGGGGCAGAAAGGCTCAGGGCAAA
GCCAAAGACTGGTCGGAAAGCAGAGTTCATACCAGAAAGTCTGCAGAAGCTTCAAGGTGT
TCTTCCGTCCCAAGTTGGGAAACCGGGGAGGTTTCTGTATGACACAAGGCTGCATAGGGC
CCAGGAAAATAGGCAGGACTCCTAAGTCTCTACGCTTAAGGAGCCCAGGGTCCACTTCAG
GAGGCAGATATAGGAGCAGATTCTCTGTTGAGGGCCTTGAAAGAACAGGGTGTCAGTAGG
CTGAAGGACCACAGATAAGGGGCGCCTGGTTCAGACGGGTCCCAGAAGGCCTACTGGAAG
AGGTGACCTCTGAGCTCTATCTGGAAGGAGGAAACAGGAAGCAGGAAGGGATCCTTGGCA
GAAGTGGCAGCTTGAGCAAAAAAAGCAGTTTGTGCATGGAGTTTCTGCTGTGACACAGTG
GGTTAAGAATCTGACTACAGCAACCCAGGTCCCTGCAAGTATGTGTTGGCTCTCTGGCCT
GGCATGGTGGGTTAGAGAATCTGGCATTGCCGCAGCTGTGGTGTAGGTCACAGCTATGGC
TTGGATTCAGTCCTTGGCCGAGGAATTTCCATATGCCATGGGTGTTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTGAATGGAGGTTTGCTCCGAGGAATTGAGATCTTGAACAAAGCTCACGGCAGCCTCCC
ATAATTCAGCAACCGTGCCTCAATTCTCATCATGTTGACAGATGGCGAGCCCACGGAGGG
TAAGCGCCCGAAGGGCTACCTTGGGAGGTGGTGATCTCTTCATTATCAAAGGCATTCAAG
CTGAACTTGGAAATTCAACCACTGAGGATGTTGTCAGGGGGCAGAAAGGCTCAGGGCAAA
GCCAAAGACTGGTCGGAAAGCAGAGTTCATACCAGAAAGTCTGCAGAAGCTTCAAGGTGT
TCTTCCGTCCCAAGTTGGGAAACCGGGGAGGTTTCTGTATGACACAAGGCTGCATAGGGC
CCAGGAAAATAGGCAGGACTCCTAAGTCTCTACGCTTAAGGAGCCCAGGGTCCACTTCAG
GAGGCAGATATAGGAGCAGATTCTCTGTTGAGGGCCTTGAAAGAACAGGGTGTCAGTAGG
CTGAAGGACCACAGATAAGGGGCGCCTGGTTCAGACGGGTCCCAGAAGGCCTACTGGAAG
AGGTGACCTCTGAGCTCTATCTGGAAGGAGGAAACAGGAAGCAGGAAGGGATCCTTGGCA
GAAGTGGCAGCTTGAGCAAAAAAAGCAGTTTGTGCATGGAGTTTCTGCTGTGACACAGTG
GGTTAAGAATCTGACTACAGCAACCCAGGTCCCTGCAAGTATGTGTTGGCTCTCTGGCCT
GGCATGGTGGGTTAGAGAATCTGGCATTGCCGCAGCTGTGGTGTAGGTCACAGCTATGGC
TTGGATTCAGTCCTTGGCCGAGGAATTTCCATATGCCATGGGTGTTGG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|455855|gb|AAB29213.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|455855|gb|AAB29213.1|

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               82-174, + strand, RNAz p=0.76994
               

               
               387-582, + strand, RNAz p=0.997123

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               82-174, + strand, RNAz p=0.76994
               

               
               387-582, + strand, RNAz p=0.997123

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               1-174, gnl|bosTau2|chr22 (42348868-42348694)
               

               
               1-174, gnl|Hg17|chr3 (52792277-52792477)
               

               
               1-174, gnl|Mm7|chr14 (28366565-28366380)
               


               
               200-384, gnl|bosTau2|chr22 (42348695-42348511)
               

               
               200-384, gnl|canFam2|chr20 (40041628-40041207)
               

               
               200-384, gnl|hg17|chr3 (52792440-52792889)
               

               
               200-384, gnl|Hg17|chr3 (52792476-52792661)
               

               
               200-384, gnl|loxAfr1|scaffold_102 (68003-67549)
               

               
               200-384, gnl|mm7|chr14 (28366404-28366037)
               

               
               200-384, gnl|Mm7|chr14 (28366381-28366201)
               

               
               200-384, gnl|panTro1|chr2 (54436423-54436871)
               

               
               200-384, gnl|rn3|chr16 (6371514-6371150)
               


               
               387-636, gnl|bosTau2|chr22 (42348425-42348176)
               

               
               387-636, gnl|Hg17|chr3 (52792756-52793000)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-174, gnl|bosTau2|chr22 (42348868-42348694)
               

               
               1-174, gnl|Hg17|chr3 (52792277-52792477)
               

               
               1-174, gnl|Mm7|chr14 (28366565-28366380)
               


               
               200-384, gnl|bosTau2|chr22 (42348695-42348511)
               

               
               200-384, gnl|canFam2|chr20 (40041628-40041207)
               

               
               200-384, gnl|hg17|chr3 (52792440-52792889)
               

               
               200-384, gnl|Hg17|chr3 (52792476-52792661)
               

               
               200-384, gnl|loxAfr1|scaffold_102 (68003-67549)
               

               
               200-384, gnl|mm7|chr14 (28366404-28366037)
               

               
               200-384, gnl|Mm7|chr14 (28366381-28366201)
               

               
               200-384, gnl|panTro1|chr2 (54436423-54436871)
               

               
               200-384, gnl|rn3|chr16 (6371514-6371150)
               


               
               387-636, gnl|bosTau2|chr22 (42348425-42348176)
               

               
               387-636, gnl|Hg17|chr3 (52792756-52793000)

	82-174, + strand, RNAz p=0.76994
	387-582, + strand, RNAz p=0.997123

	1-174, gnl\|bosTau2\|chr22 (42348868-42348694)
	1-174, gnl\|Hg17\|chr3 (52792277-52792477)
	1-174, gnl\|Mm7\|chr14 (28366565-28366380)

	200-384, gnl\|bosTau2\|chr22 (42348695-42348511)
	200-384, gnl\|canFam2\|chr20 (40041628-40041207)
	200-384, gnl\|hg17\|chr3 (52792440-52792889)
	200-384, gnl\|Hg17\|chr3 (52792476-52792661)
	200-384, gnl\|loxAfr1\|scaffold_102 (68003-67549)
	200-384, gnl\|mm7\|chr14 (28366404-28366037)
	200-384, gnl\|Mm7\|chr14 (28366381-28366201)
	200-384, gnl\|panTro1\|chr2 (54436423-54436871)
	200-384, gnl\|rn3\|chr16 (6371514-6371150)

	387-636, gnl\|bosTau2\|chr22 (42348425-42348176)
	387-636, gnl\|Hg17\|chr3 (52792756-52793000)