Non-Coding RNA Search

Ss1.1-Pig3-SRG8023J21.5

Sequence:


               
               TTTTGCTTTAAGATTAGAAATCGAAGCCCGTTGCAGATGTAACTGGCTCCAAGTCCTTAA
CTTAGAGAACCCATGACTTATGTCTCCCAGTCAGGTTAATGTTCCTCTCTTCTGCAAATA
ATCTGAATTTCTGTGTCCCTCTAAATAAATGATCGTTATAAGTGGATCTGTCTTTAAAAT
AAAATGTCTGTTTTCTCGTAGAGGAGAAAAGCCATATTCCTGTGCCGTGTGCGGCAAATC
CTTCTCTGACTCGAGTGCCAAGCGGAGACACTGCATTCTACACACGGGCAAAAAGCCTTT
CTCCTGCCCTGAGTGTAACTTACAGTTTGCGCGCTTAGACAACTTGAAGGCTCACCTGAA
AATCCACAGCAAAGAGAAACACGTGTCCGATGCCAGCAGCGTTTCCGGCAACAGTAACAC
CGAAGAGGTCAGGAATGTCCTCCAGCTGCAGCCCTATCAGCTCTCTACCTCTGGGGAGCA
GGAAATTCAGCTTCTTGTAACCGATTCTGTACATAACATCAATTTCATGCCTGGTCCTAG
CCAAGGAATCAGCATCGTCACTGCGGAGAGCTCCCAGAACATGACCGCAGACCAGGCTGC
CAATCTCACGCTGCTCGCGCAGCAGCCAGAGCAGCTGCAGAATTTGATACTCTCAGCTCA
GCAGGAGCAAACCGAACACATGCAGAGCCTCAATATGATTGAAAGCCAGATGGAACCCTC
CCAGACGGAGCCAGTGCACGTAATCACACTCTCCAAGGAAACCCTGGAACATCTTCACGC
CCATCAAGAGCAAACAGGGCAGCTCCATTTAGCAGGTGCTTCAGATCCGGCTCAGCACCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTGCTTTAAGATTAGAAATCGAAGCCCGTTGCAGATGTAACTGGCTCCAAGTCCTTAA
CTTAGAGAACCCATGACTTATGTCTCCCAGTCAGGTTAATGTTCCTCTCTTCTGCAAATA
ATCTGAATTTCTGTGTCCCTCTAAATAAATGATCGTTATAAGTGGATCTGTCTTTAAAAT
AAAATGTCTGTTTTCTCGTAGAGGAGAAAAGCCATATTCCTGTGCCGTGTGCGGCAAATC
CTTCTCTGACTCGAGTGCCAAGCGGAGACACTGCATTCTACACACGGGCAAAAAGCCTTT
CTCCTGCCCTGAGTGTAACTTACAGTTTGCGCGCTTAGACAACTTGAAGGCTCACCTGAA
AATCCACAGCAAAGAGAAACACGTGTCCGATGCCAGCAGCGTTTCCGGCAACAGTAACAC
CGAAGAGGTCAGGAATGTCCTCCAGCTGCAGCCCTATCAGCTCTCTACCTCTGGGGAGCA
GGAAATTCAGCTTCTTGTAACCGATTCTGTACATAACATCAATTTCATGCCTGGTCCTAG
CCAAGGAATCAGCATCGTCACTGCGGAGAGCTCCCAGAACATGACCGCAGACCAGGCTGC
CAATCTCACGCTGCTCGCGCAGCAGCCAGAGCAGCTGCAGAATTTGATACTCTCAGCTCA
GCAGGAGCAAACCGAACACATGCAGAGCCTCAATATGATTGAAAGCCAGATGGAACCCTC
CCAGACGGAGCCAGTGCACGTAATCACACTCTCCAAGGAAACCCTGGAACATCTTCACGC
CCATCAAGAGCAAACAGGGCAGCTCCATTTAGCAGGTGCTTCAGATCCGGCTCAGCACCT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               204-323, - strand, RNAz p=0.536038
               

               
               484-643, - strand, RNAz p=0.884722

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               204-323, - strand, RNAz p=0.536038
               

               
               484-643, - strand, RNAz p=0.884722

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-840, gnl|bosTau2|chr9 (23096583-23095750)
               

               
               1-840, gnl|Hg17|chr6 (109894652-109893829)
               

               
               1-840, gnl|Mm7|chr10 (41274612-41275544)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-840, gnl|bosTau2|chr9 (23096583-23095750)
               

               
               1-840, gnl|Hg17|chr6 (109894652-109893829)
               

               
               1-840, gnl|Mm7|chr10 (41274612-41275544)

	204-323, - strand, RNAz p=0.536038
	484-643, - strand, RNAz p=0.884722

	1-840, gnl\|bosTau2\|chr9 (23096583-23095750)
	1-840, gnl\|Hg17\|chr6 (109894652-109893829)
	1-840, gnl\|Mm7\|chr10 (41274612-41275544)