Non-Coding RNA Search

Ss1.1-Pig3-SRG8023L21.5

Sequence:


               
               CTTCCCCTTGGGCCTCCTTAAACACTGGGGGCTGGTGGACCGTTTGAAGCTGCAGCTGGG
TCACGCCTGCTTCCTCCCTGTCCTGCTGCATCAGAGGCTGTATCTGTTGGTGGGATTTGA
ACAAAGTGGCCCTTCAAGGCAAGCTCAAGTGTGCTTGCCACCTCAGCCGGGTCCTGCTGG
GGGGGGGCCGTGGCTGAAGAAAGGTGCAAGGCCAAAGCTGTCACGTGTGATGGCCTTTTT
CTTCTGGCCGTATCTGCCTGACAGTGTTTAAAGTATACCTTAAGCTGGAGCTGCCACCAG
CCTTTACACAGACACGCAGTTCACCTGTGCACCTACCTCCCATGCCATCAAGCATCTGTA
CTGTCACACACCTTGGGCCCAGAGGAGAGGCCTGTCTCTGAGCCTGGAAATGTGAAGCTG
GCACCTGCAACCTGCAGGGCAAATGGGCCTATTTGAGTTTAATTACACGAACCATTTTTA
TGAAGTTGATTAAAGCTTGTTGCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTCCCCTTGGGCCTCCTTAAACACTGGGGGCTGGTGGACCGTTTGAAGCTGCAGCTGGG
TCACGCCTGCTTCCTCCCTGTCCTGCTGCATCAGAGGCTGTATCTGTTGGTGGGATTTGA
ACAAAGTGGCCCTTCAAGGCAAGCTCAAGTGTGCTTGCCACCTCAGCCGGGTCCTGCTGG
GGGGGGGCCGTGGCTGAAGAAAGGTGCAAGGCCAAAGCTGTCACGTGTGATGGCCTTTTT
CTTCTGGCCGTATCTGCCTGACAGTGTTTAAAGTATACCTTAAGCTGGAGCTGCCACCAG
CCTTTACACAGACACGCAGTTCACCTGTGCACCTACCTCCCATGCCATCAAGCATCTGTA
CTGTCACACACCTTGGGCCCAGAGGAGAGGCCTGTCTCTGAGCCTGGAAATGTGAAGCTG
GCACCTGCAACCTGCAGGGCAAATGGGCCTATTTGAGTTTAATTACACGAACCATTTTTA
TGAAGTTGATTAAAGCTTGTTGCG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               98-364, - strand, RNAz p=0.974771

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               98-364, - strand, RNAz p=0.974771

Predicted microRNA(s): 1 entry(ies)

More info

Predicted microRNA(s): 1 entry(ies)

Help | Less info


               
               172-245, + strand, RNAmicro p=0.999509

Predicted microRNA(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               172-245, + strand, RNAmicro p=0.999509

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-501, gnl|bosTau2|chr25 (34799275-34798775)
               

               
               1-501, gnl|Hg17|chr7 (98699112-98699641)
               

               
               1-501, gnl|Mm7|chr5 (144210202-144210676)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-501, gnl|bosTau2|chr25 (34799275-34798775)
               

               
               1-501, gnl|Hg17|chr7 (98699112-98699641)
               

               
               1-501, gnl|Mm7|chr5 (144210202-144210676)

	1-501, gnl\|bosTau2\|chr25 (34799275-34798775)
	1-501, gnl\|Hg17\|chr7 (98699112-98699641)
	1-501, gnl\|Mm7\|chr5 (144210202-144210676)