Non-Coding RNA Search

Ss1.1-Pig3-SRG8023N15.3

Sequence:


               
               GACAAAAAAAAAACAAAAAACAAAAAAGTAGAAGAAACATTTAGGCTAAACTTCTATTGT
GTTTCTAGGTAATCTTGCTTTTATTGTCTCCTAGTACCTGACCCATAGTAATAGTGTTTG
ACACATAGTGGACCATTGATAACTATTTTATAAATATAAATGTATAAATATCTTTTCAGA
GATAATTTTATAATTTCAGATGTGCCATAATCACTTTACTCTGTAGATAACCACTACCTA
ACAACACTGTCTAAAGTTTGGGGGGAGAAGGAAATTTTAGCCCTCAATCTTGGTTGAAGA
GTATTTGGGGAAAATGCTTTTTGATAGCTTATAGTTACTGTTTACATCATCTTGTTCATG
TGTAATTAGTACTACCATAATGATGAGGCTGAATGCTGTCCTTATCATTTAGTACAAACC
TATACTTTATGTTCATGTGTAGAGAAACTGGGCCTTATAAGTTCCATGAGATTTAGGGGC
CATGTTATTTATCAGACATTTTGACATTTGTGATGGCAGTAATAACAGTGAAGATACTGC
ATTTTCTGGAAAGAATCACTGGTATCAGTCTCTTCTGCTATTTAGTTTTGAATTGCTCAT
CATCAGCAACTCCCTAGCAAACAAATTTTGAGTTCTATCTAAGTATTCTAATACTTGATT
TAATTTGAATTTTATTATTGCAGTGTTTGTATTTCTACCAGTAGGATTGTTTGGGCTTAA
CAAACTTGGGTTTATGTGTCATTAGAGGAATTGGATGATTGTTAGAAAAAAAAGGCAGTT
TACCCAGTTTCCTGGCAGTTAACTTTCTCTGTAGGGAGCTGACCAGTGTTGAAAAAAATG
CTGGCAAAATTTGAGGAAGCATGTGTACAGAGGAAGTGAAGAGGATTGGGGCAGAGCCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACAAAAAAAAAACAAAAAACAAAAAAGTAGAAGAAACATTTAGGCTAAACTTCTATTGT
GTTTCTAGGTAATCTTGCTTTTATTGTCTCCTAGTACCTGACCCATAGTAATAGTGTTTG
ACACATAGTGGACCATTGATAACTATTTTATAAATATAAATGTATAAATATCTTTTCAGA
GATAATTTTATAATTTCAGATGTGCCATAATCACTTTACTCTGTAGATAACCACTACCTA
ACAACACTGTCTAAAGTTTGGGGGGAGAAGGAAATTTTAGCCCTCAATCTTGGTTGAAGA
GTATTTGGGGAAAATGCTTTTTGATAGCTTATAGTTACTGTTTACATCATCTTGTTCATG
TGTAATTAGTACTACCATAATGATGAGGCTGAATGCTGTCCTTATCATTTAGTACAAACC
TATACTTTATGTTCATGTGTAGAGAAACTGGGCCTTATAAGTTCCATGAGATTTAGGGGC
CATGTTATTTATCAGACATTTTGACATTTGTGATGGCAGTAATAACAGTGAAGATACTGC
ATTTTCTGGAAAGAATCACTGGTATCAGTCTCTTCTGCTATTTAGTTTTGAATTGCTCAT
CATCAGCAACTCCCTAGCAAACAAATTTTGAGTTCTATCTAAGTATTCTAATACTTGATT
TAATTTGAATTTTATTATTGCAGTGTTTGTATTTCTACCAGTAGGATTGTTTGGGCTTAA
CAAACTTGGGTTTATGTGTCATTAGAGGAATTGGATGATTGTTAGAAAAAAAAGGCAGTT
TACCCAGTTTCCTGGCAGTTAACTTTCTCTGTAGGGAGCTGACCAGTGTTGAAAAAAATG
CTGGCAAAATTTGAGGAAGCATGTGTACAGAGGAAGTGAAGAGGATTGGGGCAGAGCCAG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               790-900, + strand, RNAz p=0.733255

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               790-900, + strand, RNAz p=0.733255

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               814-941, + strand, RNAmicro p=0.995296

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               814-941, + strand, RNAmicro p=0.995296

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               29-900, gnl|bosTau2|chr27 (1510718-1509856)
               

               
               29-900, gnl|Hg17|chr9 (99795046-99795917)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               29-900, gnl|bosTau2|chr27 (1510718-1509856)
               

               
               29-900, gnl|Hg17|chr9 (99795046-99795917)

	29-900, gnl\|bosTau2\|chr27 (1510718-1509856)
	29-900, gnl\|Hg17\|chr9 (99795046-99795917)