Ss1.1-Pig3-SRG8024C11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCCTCTCCCCCTATCTTGGCTGGGGCTGACCTGACAGCGGGTCCAGCTAGGAATTGGCCT GTTCACTTCGCTTGGAACTTACAGCCGCGGAGCATACGGGGGACTCGCTGGGGGGAGTCC CCCCCACCCCCACTGTGTGAGCTTAAACTGCATGGCTGTGTGAGCTTGATAAGGAACATG AAGGGGGGCTGGCCATGTGAGATCCGCTGGCAAGTGGGCCTGGCTGTGGAGGACGGCTCA TCTCTGGGAGCACCAACGGTGGGATGCCTCCCGGACGTGGTGCCGGAGGGGACGCTGCTC AACATGGTGCTGATGATGATGCACCGGCCCCGAAGCTGCTCCTACCATCTGCTGCTGGAG CACCATCGCCCCAGCCGCATCCAGGGGCTTCGCTGGACGCCACTCACCAACAGCGAGGAG TCCCTGGATTTCAGCGTGAGCCTGGAGCAGGCCTCCACAGAGCGGGTCCTCAGGGCTGGG AAACAGCTGCATCGACATCTCCTGGCCACCTGCCCCAACCTCATCCGAGACCGAAAGTAC CACCTTAGGCTCCACCGGCAGTGCTGCTCTGGCCGGGACCTAGTAGATGGTCCATTCCCG GAGCCAAGCCGTGGGAATCTGCCAGGTGCTGCTGGATGAAGGTGCCCTCTGTCATGTGAA ACACGACTGGGCCTTCCAGGACCGAGATACCCAATTCTACCGCTTCCCGGGGCTGGAGCC AGAGCCTGCGGGTGTCCATGAGCTGGAGGAGGAGTTGGTGGAGGCGCTGACCCTGCTCTC CCAGCGGGGGCCTGACGCCCTGCTCACAGTGGCCCTTCGAAAGCCCCCGGGTCAGCGCAC AGATGAGGAGCTGGACCTCATCTTTGAGGAGCTGCTGCACGTCAAGGCTGTGGCCCACCT TTCCAACTCGGTGAAGCGGGAATTAGCGGCGGTTCTGCTCTTTGAACCACCGAGTGTACC GTGTAGCCCTCACCAAGCTGTCCCCTCCTGTCATCCCCTTCATGCCCCTTCTTCTCAAAG ACATGACCTTCATCCATGAGGGAAACCACACCCTGGTGGAGAATCTCATCAACTTTGAGA AGATGGTGAGCTCGAGGAGACTGGGCGTGTGACACCGGCTCGGGCTGGCGGCTCTGCCTA TGGCCTTGGAAGGGACAGGGGGTGGGAGATGGTCTAAAGCCGCCAGCAATAATATAAATA AGAATCATTCCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCCTCTCCCCCTATCTTGGCTGGGGCTGACCTGACAGCGGGTCCAGCTAGGAATTGGCCT GTTCACTTCGCTTGGAACTTACAGCCGCGGAGCATACGGGGGACTCGCTGGGGGGAGTCC CCCCCACCCCCACTGTGTGAGCTTAAACTGCATGGCTGTGTGAGCTTGATAAGGAACATG AAGGGGGGCTGGCCATGTGAGATCCGCTGGCAAGTGGGCCTGGCTGTGGAGGACGGCTCA TCTCTGGGAGCACCAACGGTGGGATGCCTCCCGGACGTGGTGCCGGAGGGGACGCTGCTC AACATGGTGCTGATGATGATGCACCGGCCCCGAAGCTGCTCCTACCATCTGCTGCTGGAG CACCATCGCCCCAGCCGCATCCAGGGGCTTCGCTGGACGCCACTCACCAACAGCGAGGAG TCCCTGGATTTCAGCGTGAGCCTGGAGCAGGCCTCCACAGAGCGGGTCCTCAGGGCTGGG AAACAGCTGCATCGACATCTCCTGGCCACCTGCCCCAACCTCATCCGAGACCGAAAGTAC CACCTTAGGCTCCACCGGCAGTGCTGCTCTGGCCGGGACCTAGTAGATGGTCCATTCCCG GAGCCAAGCCGTGGGAATCTGCCAGGTGCTGCTGGATGAAGGTGCCCTCTGTCATGTGAA ACACGACTGGGCCTTCCAGGACCGAGATACCCAATTCTACCGCTTCCCGGGGCTGGAGCC AGAGCCTGCGGGTGTCCATGAGCTGGAGGAGGAGTTGGTGGAGGCGCTGACCCTGCTCTC CCAGCGGGGGCCTGACGCCCTGCTCACAGTGGCCCTTCGAAAGCCCCCGGGTCAGCGCAC AGATGAGGAGCTGGACCTCATCTTTGAGGAGCTGCTGCACGTCAAGGCTGTGGCCCACCT TTCCAACTCGGTGAAGCGGGAATTAGCGGCGGTTCTGCTCTTTGAACCACCGAGTGTACC GTGTAGCCCTCACCAAGCTGTCCCCTCCTGTCATCCCCTTCATGCCCCTTCTTCTCAAAG ACATGACCTTCATCCATGAGGGAAACCACACCCTGGTGGAGAATCTCATCAACTTTGAGA AGATGGTGAGCTCGAGGAGACTGGGCGTGTGACACCGGCTCGGGCTGGCGGCTCTGCCTA TGGCCTTGGAAGGGACAGGGGGTGGGAGATGGTCTAAAGCCGCCAGCAATAATATAAATA AGAATCATTCCC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 233-390, - strand, RNAz p=0.800467 | |
| 1006-1125, + strand, RNAz p=0.960919 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 233-390, - strand, RNAz p=0.800467 | |
| 1006-1125, + strand, RNAz p=0.960919 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of U78169, - |
| Aligned organism(s): 32 entry(ies) | More info |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
| 182-396, gnl|bosTau2|chr5 (24697104-24696890) | |
| 182-396, gnl|canFam2|chr27 (10005577-10004875) | |
| 182-396, gnl|echTel1|scaffold_303859 (2717-3389) | |
| 182-396, gnl|hg17|chr12 (46437379-46438103) | |
| 182-396, gnl|Hg17|chr12 (46438130-46437916) | |
| 182-396, gnl|loxAfr1|scaffold_127332 (36-755) | |
| 182-396, gnl|mm7|chr15 (97766834-97767524) | |
| 182-396, gnl|Mm7|chr15 (97767551-97767337) | |
| 182-396, gnl|panTro1|chr10 (47421628-47422348) | |
| 182-396, gnl|rheMac2|chr11 (44826314-44827031) | |
| 182-396, gnl|rn3|chr7 (136550306-136550995) | |
| 448-573, gnl|bosTau2|chr5 (24690801-24690674) | |
| 448-573, gnl|Hg17|chr12 (46431887-46431756) | |
| 448-573, gnl|Mm7|chr15 (97762160-97762032) | |
| 656-825, gnl|bosTau2|chr5 (24690225-24690056) | |
| 656-825, gnl|canFam2|chr27 (10012087-10011896) | |
| 656-825, gnl|danRer3|chrNA (409083-409274) | |
| 656-825, gnl|dasNov1|scaffold_189641 (4191-4377) | |
| 656-825, gnl|echTel1|scaffold_305746 (536-345) | |
| 656-825, gnl|fr1|chrUn (264279542-264279728) | |
| 656-825, gnl|galGal2|chrUn (6521379-6521178) | |
| 656-825, gnl|hg17|chr12 (46431079-46431270) | |
| 656-825, gnl|Hg17|chr12 (46431267-46431098) | |
| 656-825, gnl|mm7|chr15 (97761139-97761326) | |
| 656-825, gnl|Mm7|chr15 (97761323-97761154) | |
| 656-825, gnl|panTro1|chr10_random (19647903-19648094) | |
| 656-825, gnl|rheMac2|chr11 (44819501-44819692) | |
| 656-825, gnl|rn3|chr7 (136544467-136544656) | |
| 656-825, gnl|tetNig1|chr9 (8650506-8650319) | |
| 656-825, gnl|xenTro1|scaffold_136 (777230-777030) | |
| 1006-1211, gnl|bosTau2|chr5 (24678092-24677887) | |
| 1006-1211, gnl|Hg17|chr12 (46418819-46418615) |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 182-396, gnl|bosTau2|chr5 (24697104-24696890) | |
| 182-396, gnl|canFam2|chr27 (10005577-10004875) | |
| 182-396, gnl|echTel1|scaffold_303859 (2717-3389) | |
| 182-396, gnl|hg17|chr12 (46437379-46438103) | |
| 182-396, gnl|Hg17|chr12 (46438130-46437916) | |
| 182-396, gnl|loxAfr1|scaffold_127332 (36-755) | |
| 182-396, gnl|mm7|chr15 (97766834-97767524) | |
| 182-396, gnl|Mm7|chr15 (97767551-97767337) | |
| 182-396, gnl|panTro1|chr10 (47421628-47422348) | |
| 182-396, gnl|rheMac2|chr11 (44826314-44827031) | |
| 182-396, gnl|rn3|chr7 (136550306-136550995) | |
| 448-573, gnl|bosTau2|chr5 (24690801-24690674) | |
| 448-573, gnl|Hg17|chr12 (46431887-46431756) | |
| 448-573, gnl|Mm7|chr15 (97762160-97762032) | |
| 656-825, gnl|bosTau2|chr5 (24690225-24690056) | |
| 656-825, gnl|canFam2|chr27 (10012087-10011896) | |
| 656-825, gnl|danRer3|chrNA (409083-409274) | |
| 656-825, gnl|dasNov1|scaffold_189641 (4191-4377) | |
| 656-825, gnl|echTel1|scaffold_305746 (536-345) | |
| 656-825, gnl|fr1|chrUn (264279542-264279728) | |
| 656-825, gnl|galGal2|chrUn (6521379-6521178) | |
| 656-825, gnl|hg17|chr12 (46431079-46431270) | |
| 656-825, gnl|Hg17|chr12 (46431267-46431098) | |
| 656-825, gnl|mm7|chr15 (97761139-97761326) | |
| 656-825, gnl|Mm7|chr15 (97761323-97761154) | |
| 656-825, gnl|panTro1|chr10_random (19647903-19648094) | |
| 656-825, gnl|rheMac2|chr11 (44819501-44819692) | |
| 656-825, gnl|rn3|chr7 (136544467-136544656) | |
| 656-825, gnl|tetNig1|chr9 (8650506-8650319) | |
| 656-825, gnl|xenTro1|scaffold_136 (777230-777030) | |
| 1006-1211, gnl|bosTau2|chr5 (24678092-24677887) | |
| 1006-1211, gnl|Hg17|chr12 (46418819-46418615) |