Non-Coding RNA Search

Ss1.1-Pig3-SRG8024C17.3

Sequence:


               
               GGAAAACAGCAGCGTTTCAAGACTAAACGTGTGGAAAAGAGTCCAACATGGGACCCCGTC
AGCTCGCTGTGTGGAATACTTCCAATCTGAGTCATGACCAACGACGAAAATACATCTTCA
GTGATGAGGGAGGACAAAACCAGCCGGGCCTGCGGACCCACCATGACATCCCTCTCCCAC
AAAGAGGAGAGCTCCCTGCCTCCCTGACCACCAATGGGAAAGCAGCCTCCCTAAACGGGG
CTCGGAACTCATTGATGCAAGAGCTCTCATAGCTGGAGAAGCAGATTCAGGTGATCCGGC
AGGAGCTGCAGCTGGCCATGAGCCGGAAAACGGAGCTGGAAGAATATCAAAGGACAAATC
GGACTTGTGAGCCCTAAGTGGCCATGCTGCTCCCCTTTCTCAGTTCCTGACCTTCCTCTA
AGCGCTTGAGACTTTGTAAGGCTCTTTTGTAACTACTCTCCAAGGTGTGGGGAAGCTAAG
GTCTAGGTCTTCTTGGACTTCAAGTCTTCTTGGAGGTCAAGTCTGCTCCCTCTAGCCTGC
AAAGCAGCAGCCAGTCTTCTCAAGCTCACTCCTAGGTGTCCAGGGTAGGAGTCTTTATCA
GAGCAAAAATCTTAAATTAGACAGGAGTAAATGTTGTATGAGGAATCTGTGAATAACCAG
ACAGCCCCCACTCCTGCGAACCTTTTTACCAGGTGCCACAGTAATATTTCTGTTTTTTGG
CCCTTTCTCTGCACTATCAACAACAGGAGATAAAACTGATACTCATCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAAAACAGCAGCGTTTCAAGACTAAACGTGTGGAAAAGAGTCCAACATGGGACCCCGTC
AGCTCGCTGTGTGGAATACTTCCAATCTGAGTCATGACCAACGACGAAAATACATCTTCA
GTGATGAGGGAGGACAAAACCAGCCGGGCCTGCGGACCCACCATGACATCCCTCTCCCAC
AAAGAGGAGAGCTCCCTGCCTCCCTGACCACCAATGGGAAAGCAGCCTCCCTAAACGGGG
CTCGGAACTCATTGATGCAAGAGCTCTCATAGCTGGAGAAGCAGATTCAGGTGATCCGGC
AGGAGCTGCAGCTGGCCATGAGCCGGAAAACGGAGCTGGAAGAATATCAAAGGACAAATC
GGACTTGTGAGCCCTAAGTGGCCATGCTGCTCCCCTTTCTCAGTTCCTGACCTTCCTCTA
AGCGCTTGAGACTTTGTAAGGCTCTTTTGTAACTACTCTCCAAGGTGTGGGGAAGCTAAG
GTCTAGGTCTTCTTGGACTTCAAGTCTTCTTGGAGGTCAAGTCTGCTCCCTCTAGCCTGC
AAAGCAGCAGCCAGTCTTCTCAAGCTCACTCCTAGGTGTCCAGGGTAGGAGTCTTTATCA
GAGCAAAAATCTTAAATTAGACAGGAGTAAATGTTGTATGAGGAATCTGTGAATAACCAG
ACAGCCCCCACTCCTGCGAACCTTTTTACCAGGTGCCACAGTAATATTTCTGTTTTTTGG
CCCTTTCTCTGCACTATCAACAACAGGAGATAAAACTGATACTCATCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61865496|ref|XP_600419.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61865496|ref|XP_600419.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               161-397, - strand, RNAz p=0.862354

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               161-397, - strand, RNAz p=0.862354

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               41-766, gnl|bosTau2|chr8 (50236350-50235643)
               

               
               41-766, gnl|Hg17|chr9 (101415350-101414645)
               

               
               41-766, gnl|Mm7|chr4 (49679379-49678684)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               41-766, gnl|bosTau2|chr8 (50236350-50235643)
               

               
               41-766, gnl|Hg17|chr9 (101415350-101414645)
               

               
               41-766, gnl|Mm7|chr4 (49679379-49678684)

	41-766, gnl\|bosTau2\|chr8 (50236350-50235643)
	41-766, gnl\|Hg17\|chr9 (101415350-101414645)
	41-766, gnl\|Mm7\|chr4 (49679379-49678684)