Non-Coding RNA Search

Ss1.1-Pig3-SRG8024H22.5

Sequence:


               
               GGATGATGGAGGAGGAGGAACTGGAATTCGTGGAGGAGCTGGAAGCCGTGCTGCAGCTCA
CCCCAGACGTGCAGCTCGCCATCGAGCAGGTATTTCCAAGCCAGGATCCTCTAGATCGAG
CAGATTTCAATGCTGTGGAGTATATCAACACCCTGTTCCCAACGGAGCAATCTCTGGCAA
ACATTGACGAAGTCGTGAACAAAATTAGACTGAAAATAAGCAGTTCGTAACGCAAGCTGA
AGCAGAGGCTTTTTTTCCAGGGAGCTTTTGCGTCCCATCCTGGTCAACTCCCGGGGGTGA
GAGGCCTGCTGTCCATCCCCGCTGGCCGGTGGTTTGCTGAAGATAGACTGTTGGACTGGC
ACGGACTGGGGAGAGTTACGGATGTTCCAAAATACCGAGTTTTATGGGTCATGAGGCCCC
ATGTTCCCCTTTTCCCTGGAAGGGAGGAAAGTTTACTTTGAGAACTTGTTTCCGAAGCTT
CTGGAGAACACTCAGAAGGAGAGCAGTAACACAGACAGAAGGAAGTTTTCCTTTTATACA
CGTCTCCTTGACTGTGTGCGCCCAGAAAAGATACGCTTTGTAATCTGTGTGAAGAAGGGG
CAAGGGTGGACTGCTCATTCATGGCGTTTTAAAAGACTTCTTTTGAGTGGGAAAGTTCTT
TTTGGAAAGCGGTGTTTCTGACTCAGAAATTATTTGTGGAGAGGGAGTGATTTAGAAATT
GAAGACTCGATGATGCAGTTTCTTTAGTTTCCTGAAATTTCTGAATTAGCCGCTGCCTCG
TCAGCGCTCTGCTGCACACTGGGAAGAGCTTCCCATGCTGCCCGCCTCCTGCGTGGGCGA
CCTTGACGTGGTCCAGTCTGTGACCTCTTCTAACCAGACTCTGATGCGCACATGAAGGTC
ATACAGCACAGAATTCGCCCCATTTTTATCTGCTGAAATCATCAGGCAAAAGCTTTAATT
AAATGCCCACAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGATGATGGAGGAGGAGGAACTGGAATTCGTGGAGGAGCTGGAAGCCGTGCTGCAGCTCA
CCCCAGACGTGCAGCTCGCCATCGAGCAGGTATTTCCAAGCCAGGATCCTCTAGATCGAG
CAGATTTCAATGCTGTGGAGTATATCAACACCCTGTTCCCAACGGAGCAATCTCTGGCAA
ACATTGACGAAGTCGTGAACAAAATTAGACTGAAAATAAGCAGTTCGTAACGCAAGCTGA
AGCAGAGGCTTTTTTTCCAGGGAGCTTTTGCGTCCCATCCTGGTCAACTCCCGGGGGTGA
GAGGCCTGCTGTCCATCCCCGCTGGCCGGTGGTTTGCTGAAGATAGACTGTTGGACTGGC
ACGGACTGGGGAGAGTTACGGATGTTCCAAAATACCGAGTTTTATGGGTCATGAGGCCCC
ATGTTCCCCTTTTCCCTGGAAGGGAGGAAAGTTTACTTTGAGAACTTGTTTCCGAAGCTT
CTGGAGAACACTCAGAAGGAGAGCAGTAACACAGACAGAAGGAAGTTTTCCTTTTATACA
CGTCTCCTTGACTGTGTGCGCCCAGAAAAGATACGCTTTGTAATCTGTGTGAAGAAGGGG
CAAGGGTGGACTGCTCATTCATGGCGTTTTAAAAGACTTCTTTTGAGTGGGAAAGTTCTT
TTTGGAAAGCGGTGTTTCTGACTCAGAAATTATTTGTGGAGAGGGAGTGATTTAGAAATT
GAAGACTCGATGATGCAGTTTCTTTAGTTTCCTGAAATTTCTGAATTAGCCGCTGCCTCG
TCAGCGCTCTGCTGCACACTGGGAAGAGCTTCCCATGCTGCCCGCCTCCTGCGTGGGCGA
CCTTGACGTGGTCCAGTCTGTGACCTCTTCTAACCAGACTCTGATGCGCACATGAAGGTC
ATACAGCACAGAATTCGCCCCATTTTTATCTGCTGAAATCATCAGGCAAAAGCTTTAATT
AAATGCCCACAT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               760-874, - strand, RNAz p=0.614169

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               760-874, - strand, RNAz p=0.614169

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               221-972, gnl|bosTau2|chr19 (16592721-16593480)
               

               
               221-972, gnl|Hg17|chr17 (544105-542313)
               

               
               221-972, gnl|Mm7|chr11 (76241849-76240146)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               221-972, gnl|bosTau2|chr19 (16592721-16593480)
               

               
               221-972, gnl|Hg17|chr17 (544105-542313)
               

               
               221-972, gnl|Mm7|chr11 (76241849-76240146)

	221-972, gnl\|bosTau2\|chr19 (16592721-16593480)
	221-972, gnl\|Hg17\|chr17 (544105-542313)
	221-972, gnl\|Mm7\|chr11 (76241849-76240146)