Non-Coding RNA Search

Ss1.1-Pig3-SRG8024J16.3

Sequence:


               
               AAAAAGCTAGAGCAATTTTAAAAATTTTGTCCCACCTTCCTGTTCACTGTTTTTCAAAAT
GTGGCCCTTGGGTGTTCTGGCACCTGCACTCCCTGGGGCGCCTGCAGAAATGCAGCTTCC
ATGGTCCCCCTCCTGCCACGTGAGTCATAATCTCTGAGGGCGGGGCAGACCGAGTCTCGT
GTATGTCCTGTGCACAGCATAGCATGGCAAGATAGGCTTCCCTAGGTGAGTGTCTATTGA
GATTGGTGATGAGCCCATACATTTCATGTACATTCCCTCAAATCCCAGTAATTAGCAACT
CGTGTTAAGAGTTTAAGAAACAGTTGTTTTACTATGTCCTCGTATCATAAACTGGCAGTC
AGCTTATGCTCATATCACCCAAGGCGTGGTAAGAACATCACTGGTATCACAGGAGATGAG
CTTANATGGTATGTGTGTCCATGGACATCCTTTAACAGTTGTGTAATGACTTTCATGTGG
ATTAGAAAAACGGACACATCCAAGTTGTAACTTAATGGATATTACTGCTTAAAGCCAGGC
AAAAATGAAAAAGCGGATGTAAAGTCAATATAAAGTTGAATACAAATATTAGTACAGGCG
ATATGCAGATATAGCGAACTTGACTTGTATAGGTTGTATACGAAGTTTGGAAAACATTTG
TTCTAAGTGGAAGAGAAGGTAGCTATTTTTGTGTGT------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------AGGTAGCTATTATGTGAACTATGG
ATTAAATTAATAAATAAATGTAGGCCTTAATACCAAGTATCCTGAAGATTTCCCTGATAA
TTAAGACTACTGGAAGAAATGTAATAAAATGATTTGTTTGCCCACCTCCCTACTACTAAC
TCAGTTGCTTCTGTTTTTACGGGGGTGTAAAGCTCTCTCTCCTGAGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAAGCTAGAGCAATTTTAAAAATTTTGTCCCACCTTCCTGTTCACTGTTTTTCAAAAT
GTGGCCCTTGGGTGTTCTGGCACCTGCACTCCCTGGGGCGCCTGCAGAAATGCAGCTTCC
ATGGTCCCCCTCCTGCCACGTGAGTCATAATCTCTGAGGGCGGGGCAGACCGAGTCTCGT
GTATGTCCTGTGCACAGCATAGCATGGCAAGATAGGCTTCCCTAGGTGAGTGTCTATTGA
GATTGGTGATGAGCCCATACATTTCATGTACATTCCCTCAAATCCCAGTAATTAGCAACT
CGTGTTAAGAGTTTAAGAAACAGTTGTTTTACTATGTCCTCGTATCATAAACTGGCAGTC
AGCTTATGCTCATATCACCCAAGGCGTGGTAAGAACATCACTGGTATCACAGGAGATGAG
CTTANATGGTATGTGTGTCCATGGACATCCTTTAACAGTTGTGTAATGACTTTCATGTGG
ATTAGAAAAACGGACACATCCAAGTTGTAACTTAATGGATATTACTGCTTAAAGCCAGGC
AAAAATGAAAAAGCGGATGTAAAGTCAATATAAAGTTGAATACAAATATTAGTACAGGCG
ATATGCAGATATAGCGAACTTGACTTGTATAGGTTGTATACGAAGTTTGGAAAACATTTG
TTCTAAGTGGAAGAGAAGGTAGCTATTTTTGTGTGT------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------AGGTAGCTATTATGTGAACTATGG
ATTAAATTAATAAATAAATGTAGGCCTTAATACCAAGTATCCTGAAGATTTCCCTGATAA
TTAAGACTACTGGAAGAAATGTAATAAAATGATTTGTTTGCCCACCTCCCTACTACTAAC
TCAGTTGCTTCTGTTTTTACGGGGGTGTAAAGCTCTCTCTCCTGAGTT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               46-163, - strand, RNAz p=0.695052

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               46-163, - strand, RNAz p=0.695052

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               2-859, gnl|bosTau2|chrX (11340468-11341294)
               

               
               2-859, gnl|Hg17|chrX (149541033-149542064)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-859, gnl|bosTau2|chrX (11340468-11341294)
               

               
               2-859, gnl|Hg17|chrX (149541033-149542064)

	2-859, gnl\|bosTau2\|chrX (11340468-11341294)
	2-859, gnl\|Hg17\|chrX (149541033-149542064)