Non-Coding RNA Search

Ss1.1-Pig3-SRG8024L05.5

Sequence:


               
               TTCGGGCCGGCGCGCCTGGTCCGGCTGCAGGTCCCGCAGGCATGGGCAGTTGTGCGTGGC
CTCCCAGCGCGGGCGGTTGTGCTGTTCGTAGAAGAGACAGGCGACCACGACAGCGGCGGG
CACGGTGTAGAGCACGGTGAAGAGGCCCAGGCGGATCATGAGCTTCTCCAGTTTGTGCGT
CTTGGTGGGGCCTCCCTGCTGCTTGATGACCGAGCGGATGCGGAAGAGCGACACGAAGCC
GGCCAGCAGGAACATGGTGCCGATGAAGAGGTAGATGACCAGCGGCGCCAGCACGAAGCC
GCGCAGGTTGTCCAGGCTCTGGTTGCCCACGTAGCAGATGCCCGCCACCGGATCGCCGTC
CACCGAGCTGAGCGCCAGCACGGCGATAGACTTGACGCTGGGCACGAGCCAGGCGGCCAG
GTGGAAGTACTGCGAGTAGCCGGCGATGGCCTCGTTGCCCCACTTCATGCCCGCCGCCAG
GAACCACGTGAGCGACAGGATCACCCACCAGATGGAGCTGGCCATGCCGAAGAAGTAGAC
GAGCAGGAAGACCACGGTGCACAGCGCCGGGCCCGTGGTATCATAGCGCACGTGCTGCTC
CACGGCGCCCAGATCATCGCCCTCCCCGCGCCCTCCCGGGCCGCCCGCGCCCGCTCCCGC
CGCGCCGGCTCCCGCCGCCGCGCTGCCCGCGCCGCCCGCGCCGCCCGCAGCCCCCGCACC
GCCGATGCACGCCACCTTCTCGTGGCCCGCCACCAGGCGCACCAGGTAGCCGACGGACAC
GAAGAGGTAGCAGGCCGAGAGGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCGGGCCGGCGCGCCTGGTCCGGCTGCAGGTCCCGCAGGCATGGGCAGTTGTGCGTGGC
CTCCCAGCGCGGGCGGTTGTGCTGTTCGTAGAAGAGACAGGCGACCACGACAGCGGCGGG
CACGGTGTAGAGCACGGTGAAGAGGCCCAGGCGGATCATGAGCTTCTCCAGTTTGTGCGT
CTTGGTGGGGCCTCCCTGCTGCTTGATGACCGAGCGGATGCGGAAGAGCGACACGAAGCC
GGCCAGCAGGAACATGGTGCCGATGAAGAGGTAGATGACCAGCGGCGCCAGCACGAAGCC
GCGCAGGTTGTCCAGGCTCTGGTTGCCCACGTAGCAGATGCCCGCCACCGGATCGCCGTC
CACCGAGCTGAGCGCCAGCACGGCGATAGACTTGACGCTGGGCACGAGCCAGGCGGCCAG
GTGGAAGTACTGCGAGTAGCCGGCGATGGCCTCGTTGCCCCACTTCATGCCCGCCGCCAG
GAACCACGTGAGCGACAGGATCACCCACCAGATGGAGCTGGCCATGCCGAAGAAGTAGAC
GAGCAGGAAGACCACGGTGCACAGCGCCGGGCCCGTGGTATCATAGCGCACGTGCTGCTC
CACGGCGCCCAGATCATCGCCCTCCCCGCGCCCTCCCGGGCCGCCCGCGCCCGCTCCCGC
CGCGCCGGCTCCCGCCGCCGCGCTGCCCGCGCCGCCCGCGCCGCCCGCAGCCCCCGCACC
GCCGATGCACGCCACCTTCTCGTGGCCCGCCACCAGGCGCACCAGGTAGCCGACGGACAC
GAAGAGGTAGCAGGCCGAGAGGAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               FZD8_CHICK

Coded protein: 1 entry(ies)

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Protein identifier


               
               FZD8_CHICK

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               441-560, - strand, RNAz p=0.526402

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               441-560, - strand, RNAz p=0.526402

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-804, gnl|bosTau2|chr13 (15026290-15027092)
               

               
               2-804, gnl|Hg17|chr10 (35968619-35969421)
               

               
               2-804, gnl|Mm7|chr18 (9418412-9417607)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-804, gnl|bosTau2|chr13 (15026290-15027092)
               

               
               2-804, gnl|Hg17|chr10 (35968619-35969421)
               

               
               2-804, gnl|Mm7|chr18 (9418412-9417607)

	2-804, gnl\|bosTau2\|chr13 (15026290-15027092)
	2-804, gnl\|Hg17\|chr10 (35968619-35969421)
	2-804, gnl\|Mm7\|chr18 (9418412-9417607)