Non-Coding RNA Search

Ss1.1-Pig3-SRG8024P18.5

Sequence:


               
               TAAAACGCCTGTGCATCATCGAGTCTGTGTTTGAGGGTGAAGGCTCATCTACCCTGATGT
CTGCCAACTACCCAGATGGCTTCCCCGAGGACGAGCTCATGACGTGGCAGTTCATCATCC
CTGCACACCTGCGGGCCAGTGTCTCCTTCCTCCACTTCAACGTCTCCAACTGTGTGAAGA
AGGAGGAGCGGGTGGAGTACTATATCCCATGCTCCACCACCAACCCCGAGGTGTTCAAGC
TGGAGGACAAGCAGCCTGGGAACATGGCCGGGAACTTCAACCTCTCTCTGCAGGGCTGTG
ACCAAGACGCCCAAAATCCATGCATCCTCCGGCTGCAGTTTCAAGTTTTGGTCCAACGTC
CACAAGATGAAAGCAATAAAACCTACGTGGTTGACTTGAGTAACGAGCAAGCCATGTCGC
TGACCATCGAGCCACGGCTCATCAAACAGATCCGCAAGTTTGTCCCTGGCTGCTTCGTGT
GTCTGGACTCTCGGACCTGCAGCACTAACCTCACCTTGACATCTGGCTCCAAACACAAGA
TCTCCTTCCTTTGTGATGATCTGACGCGCCTGTGGATCAATGCTGAGAAAACCATAACTT
GCATGGACCACCGCTACTGCCACAGGAAGTCCTACTCGCTCCAGGTACCGTGGTACATCC
TCCAGCTGCCTGTGCAGCTGCATGACTTCTCCTGGAAGCTGCTGGTGCCCAAGGACAGCC
TCAGCCTGGCCCTGGTGCCAGCCCAGAAGCTGCAGCAGCACACACACGAGAGGGCTTGCA
ACACCAGCTTCAGCTACCTCCTGGCCAGCGCCGTCCCAGGCCAGGAGCTTTACTTTGGCT
TCTTCTGCTCTGGAGGCTCCATCGAGCAGATTCAGGTGAAGCAGAACGTCTCAGTGACCC
ACCGCACCTTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAAAACGCCTGTGCATCATCGAGTCTGTGTTTGAGGGTGAAGGCTCATCTACCCTGATGT
CTGCCAACTACCCAGATGGCTTCCCCGAGGACGAGCTCATGACGTGGCAGTTCATCATCC
CTGCACACCTGCGGGCCAGTGTCTCCTTCCTCCACTTCAACGTCTCCAACTGTGTGAAGA
AGGAGGAGCGGGTGGAGTACTATATCCCATGCTCCACCACCAACCCCGAGGTGTTCAAGC
TGGAGGACAAGCAGCCTGGGAACATGGCCGGGAACTTCAACCTCTCTCTGCAGGGCTGTG
ACCAAGACGCCCAAAATCCATGCATCCTCCGGCTGCAGTTTCAAGTTTTGGTCCAACGTC
CACAAGATGAAAGCAATAAAACCTACGTGGTTGACTTGAGTAACGAGCAAGCCATGTCGC
TGACCATCGAGCCACGGCTCATCAAACAGATCCGCAAGTTTGTCCCTGGCTGCTTCGTGT
GTCTGGACTCTCGGACCTGCAGCACTAACCTCACCTTGACATCTGGCTCCAAACACAAGA
TCTCCTTCCTTTGTGATGATCTGACGCGCCTGTGGATCAATGCTGAGAAAACCATAACTT
GCATGGACCACCGCTACTGCCACAGGAAGTCCTACTCGCTCCAGGTACCGTGGTACATCC
TCCAGCTGCCTGTGCAGCTGCATGACTTCTCCTGGAAGCTGCTGGTGCCCAAGGACAGCC
TCAGCCTGGCCCTGGTGCCAGCCCAGAAGCTGCAGCAGCACACACACGAGAGGGCTTGCA
ACACCAGCTTCAGCTACCTCCTGGCCAGCGCCGTCCCAGGCCAGGAGCTTTACTTTGGCT
TCTTCTGCTCTGGAGGCTCCATCGAGCAGATTCAGGTGAAGCAGAACGTCTCAGTGACCC
ACCGCACCTTTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61823479|ref|XP_612363.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61823479|ref|XP_612363.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               127-799, - strand, RNAz p=0.959294

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               127-799, - strand, RNAz p=0.959294

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               7-379, gnl|bosTau2|chr9 (21641068-21640696)
               

               
               7-379, gnl|Hg17|chr3 (45127337-45126965)
               

               
               7-379, gnl|Mm7|chr9 (122889223-122888851)
               


               
               600-912, gnl|bosTau2|chr9 (21631892-21631580)
               

               
               600-912, gnl|Hg17|chr3 (45110151-45109839)
               

               
               600-912, gnl|Mm7|chr9 (122885761-122885449)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-379, gnl|bosTau2|chr9 (21641068-21640696)
               

               
               7-379, gnl|Hg17|chr3 (45127337-45126965)
               

               
               7-379, gnl|Mm7|chr9 (122889223-122888851)
               


               
               600-912, gnl|bosTau2|chr9 (21631892-21631580)
               

               
               600-912, gnl|Hg17|chr3 (45110151-45109839)
               

               
               600-912, gnl|Mm7|chr9 (122885761-122885449)

	7-379, gnl\|bosTau2\|chr9 (21641068-21640696)
	7-379, gnl\|Hg17\|chr3 (45127337-45126965)
	7-379, gnl\|Mm7\|chr9 (122889223-122888851)

	600-912, gnl\|bosTau2\|chr9 (21631892-21631580)
	600-912, gnl\|Hg17\|chr3 (45110151-45109839)
	600-912, gnl\|Mm7\|chr9 (122885761-122885449)