Non-Coding RNA Search

Ss1.1-Pig3-SRG8025F12.3

Sequence:


               
               CCGTGAAGTATTGAGGTGTGAGGAAGTGGGTAAAGATGCCATTAAACACACATCCTGCAT
CCAGGGGGCAGAAATTGAAGAGACCAAGGGCACTGGTGGGACAATTGGCCCTAGAAACCT
CATCCGTAATCACTTCTTCCTCCAAGAAAGGAGGAAAGAAAGGGTAGATGAGGACAAAGA
CAAATTTAATGTTGGTAGGAAGTAGAAATAGATTGTGTCTGAAAACTTTAATCTCAGAAA
AGTAGGTCATCTTCTGTGAGCAAGCCAGAAGGGCCTGGGAGAGGTCATATCTGGAGAGGC
AAAGGCAAATTCTTCTTCCTCGTAGAATGTCTTGCTTTACTGTTCCAATAATGAAGGAAT
TTTGAAACAGAGGAAACTATTACTAAATGCACAGGAAACGAATGCGGTGGAATTGGATCC
TTTCCACTGAAATTCTTCAAATATGCTTGAATCCAAGAAATTTAAGCTTCTGTATTTTTT
TAAAGCCTTTATTCTTAGTGAAATTCTAAAAACCATGATCAAGAATGAGAAGCTTATAAA
CCTGGTTTGTGTGCAAATGTTTTAATGTTACGATGTGTTTGTTTGATGGGAAGATTTTTC
TCTTCCTGGGGAAATGAAAGGAAAAAAAATCACAGAAGCTGTCTTCTCCAGCCCCACCTT
TCCTCATTGTTATTAGGCTAAAGCTGGAGGCAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGTGAAGTATTGAGGTGTGAGGAAGTGGGTAAAGATGCCATTAAACACACATCCTGCAT
CCAGGGGGCAGAAATTGAAGAGACCAAGGGCACTGGTGGGACAATTGGCCCTAGAAACCT
CATCCGTAATCACTTCTTCCTCCAAGAAAGGAGGAAAGAAAGGGTAGATGAGGACAAAGA
CAAATTTAATGTTGGTAGGAAGTAGAAATAGATTGTGTCTGAAAACTTTAATCTCAGAAA
AGTAGGTCATCTTCTGTGAGCAAGCCAGAAGGGCCTGGGAGAGGTCATATCTGGAGAGGC
AAAGGCAAATTCTTCTTCCTCGTAGAATGTCTTGCTTTACTGTTCCAATAATGAAGGAAT
TTTGAAACAGAGGAAACTATTACTAAATGCACAGGAAACGAATGCGGTGGAATTGGATCC
TTTCCACTGAAATTCTTCAAATATGCTTGAATCCAAGAAATTTAAGCTTCTGTATTTTTT
TAAAGCCTTTATTCTTAGTGAAATTCTAAAAACCATGATCAAGAATGAGAAGCTTATAAA
CCTGGTTTGTGTGCAAATGTTTTAATGTTACGATGTGTTTGTTTGATGGGAAGATTTTTC
TCTTCCTGGGGAAATGAAAGGAAAAAAAATCACAGAAGCTGTCTTCTCCAGCCCCACCTT
TCCTCATTGTTATTAGGCTAAAGCTGGAGGCAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               86-204, - strand, RNAz p=0.641546
               

               
               544-671, - strand, RNAz p=0.99327

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               86-204, - strand, RNAz p=0.641546
               

               
               544-671, - strand, RNAz p=0.99327

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               46-695, gnl|bosTau2|chr22 (2182798-2182141)
               

               
               46-695, gnl|Hg17|chr3 (29326581-29327225)
               

               
               46-695, gnl|Mm7|chr9 (116894031-116892946)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               46-695, gnl|bosTau2|chr22 (2182798-2182141)
               

               
               46-695, gnl|Hg17|chr3 (29326581-29327225)
               

               
               46-695, gnl|Mm7|chr9 (116894031-116892946)

	86-204, - strand, RNAz p=0.641546
	544-671, - strand, RNAz p=0.99327

	46-695, gnl\|bosTau2\|chr22 (2182798-2182141)
	46-695, gnl\|Hg17\|chr3 (29326581-29327225)
	46-695, gnl\|Mm7\|chr9 (116894031-116892946)