Non-Coding RNA Search

Ss1.1-Pig3-SRG8025F15.5

Sequence:


               
               CGGTGCTGCAGCATCACAATCAGCTTATGATCCCACAGCCAGCCGACCAGCCGACTGAGG
GAAGCAAGCAGCTGTTGAACAACTATCCTGTCTACATAACGAGCAAACAGTGGGACGAGG
CTGTAAATTCTTCAAAGAAAGACGGGCGGCGGCTCCTCCGATACCTCATCAGATTTGTTT
TCACAACCGATGAGCTTAAGTACTCATGCGGCCTTGGGAAAAGGAAAAGAATTCATTAGG
ATGCACTGTACCTCCAACCCCGACTGGTGGATGCCCTCGGAGGAACAGATAAACAAAGTG
TTCAGCGACGCTGTGGGGCACGCCCGGCAGGGGCGGGCAGTGGGGACCTTCCTGCACAAC
GGTGGCTCCTTTTATGAAGGGATCGATCACCATGCTTCCCAGGATGAAGTCTTCAATAAA
AACTCCCAGGATGGTTCTGGTGATTAGTGGACAGAATCTTTCCACCCTAGCAGCCAGTCC
TCTCAGCGGTTCCAGTTGTGAATGTCTTGTTCCCATCACGTTAGACTCCAAAGCATGTCA
TTCCGTCAGACGTTATACATCCTAAACCTTCACTCTCTTGACCCACTGCCACAGTTCCCA
GTACAAATCCATTTTAGGCTGGTTCGGGAAGTCTGCGGAGCCTGCAAACGTTTTCAGACT
ATATCATAAAAAGAAAAAACTAGAGTTGTTTTTAAAGGATTACTAGTTAGACTGTCTAGT
GAGGGAGAAAAAAGATAGATTAGCTTCTTGTCACTGGTCTGAAATTTTCAAGTAAGCTCT
GCTTCCTGAGCAGAGCCGGTCCCCATGGAGATTGGGTTTAGAGTTCCTGCCCGTGGGAGA
AGGTAGAGGCCTGGAACAAGCATTCTCTTATTTTAATTCAAGTCGGTTGTCTTTATGTTT
TCCAAAGACTTGAATTTATACTTCTCAGCAAAGACGTAGGCTAGGCGACCTTGTGTCATG
TCTACGTTGACAGAGCCTGTTTCATTGAAAAGAAGCCAGAGAACAGAGGCCACCTCTAGA
CCATGATTAGTTGGAAGTCAGCTGTTTTTCCCAGTTACATTTACCAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGTGCTGCAGCATCACAATCAGCTTATGATCCCACAGCCAGCCGACCAGCCGACTGAGG
GAAGCAAGCAGCTGTTGAACAACTATCCTGTCTACATAACGAGCAAACAGTGGGACGAGG
CTGTAAATTCTTCAAAGAAAGACGGGCGGCGGCTCCTCCGATACCTCATCAGATTTGTTT
TCACAACCGATGAGCTTAAGTACTCATGCGGCCTTGGGAAAAGGAAAAGAATTCATTAGG
ATGCACTGTACCTCCAACCCCGACTGGTGGATGCCCTCGGAGGAACAGATAAACAAAGTG
TTCAGCGACGCTGTGGGGCACGCCCGGCAGGGGCGGGCAGTGGGGACCTTCCTGCACAAC
GGTGGCTCCTTTTATGAAGGGATCGATCACCATGCTTCCCAGGATGAAGTCTTCAATAAA
AACTCCCAGGATGGTTCTGGTGATTAGTGGACAGAATCTTTCCACCCTAGCAGCCAGTCC
TCTCAGCGGTTCCAGTTGTGAATGTCTTGTTCCCATCACGTTAGACTCCAAAGCATGTCA
TTCCGTCAGACGTTATACATCCTAAACCTTCACTCTCTTGACCCACTGCCACAGTTCCCA
GTACAAATCCATTTTAGGCTGGTTCGGGAAGTCTGCGGAGCCTGCAAACGTTTTCAGACT
ATATCATAAAAAGAAAAAACTAGAGTTGTTTTTAAAGGATTACTAGTTAGACTGTCTAGT
GAGGGAGAAAAAAGATAGATTAGCTTCTTGTCACTGGTCTGAAATTTTCAAGTAAGCTCT
GCTTCCTGAGCAGAGCCGGTCCCCATGGAGATTGGGTTTAGAGTTCCTGCCCGTGGGAGA
AGGTAGAGGCCTGGAACAAGCATTCTCTTATTTTAATTCAAGTCGGTTGTCTTTATGTTT
TCCAAAGACTTGAATTTATACTTCTCAGCAAAGACGTAGGCTAGGCGACCTTGTGTCATG
TCTACGTTGACAGAGCCTGTTTCATTGAAAAGAAGCCAGAGAACAGAGGCCACCTCTAGA
CCATGATTAGTTGGAAGTCAGCTGTTTTTCCCAGTTACATTTACCAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               111-229, - strand, RNAz p=0.755473

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               111-229, - strand, RNAz p=0.755473

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               58-229, gnl|bosTau2|chr6 (32175957-32175786)
               

               
               58-229, gnl|canFam2|chr13 (42211070-42211329)
               

               
               58-229, gnl|danRer3|chr5 (17212904-17213152)
               

               
               58-229, gnl|dasNov1|scaffold_30564 (1753-1494)
               

               
               58-229, gnl|echTel1|scaffold_306808 (3904-3644)
               

               
               58-229, gnl|fr1|chrUn (167340056-167340313)
               

               
               58-229, gnl|galGal2|chr4 (68789284-68789025)
               

               
               58-229, gnl|hg17|chr4 (41962994-41963253)
               

               
               58-229, gnl|Hg17|chr4 (41963241-41963070)
               

               
               58-229, gnl|loxAfr1|scaffold_4339 (19583-19843)
               

               
               58-229, gnl|mm7|chr5 (66755579-66755838)
               

               
               58-229, gnl|Mm7|chr5 (66755826-66755655)
               

               
               58-229, gnl|monDom2|scaffold_26 (7536054-7536313)
               

               
               58-229, gnl|oryCun1|scaffold_213408 (50159-49900)
               

               
               58-229, gnl|panTro1|chr3 (44649341-44649600)
               

               
               58-229, gnl|rheMac2|chr5 (37180834-37181093)
               

               
               58-229, gnl|rn3|chr14 (43389141-43388882)
               

               
               58-229, gnl|tetNig1|chr1 (5203175-5203422)
               

               
               58-229, gnl|xenTro1|scaffold_84 (1033441-1033182)

Aligned organism(s): 19 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               58-229, gnl|bosTau2|chr6 (32175957-32175786)
               

               
               58-229, gnl|canFam2|chr13 (42211070-42211329)
               

               
               58-229, gnl|danRer3|chr5 (17212904-17213152)
               

               
               58-229, gnl|dasNov1|scaffold_30564 (1753-1494)
               

               
               58-229, gnl|echTel1|scaffold_306808 (3904-3644)
               

               
               58-229, gnl|fr1|chrUn (167340056-167340313)
               

               
               58-229, gnl|galGal2|chr4 (68789284-68789025)
               

               
               58-229, gnl|hg17|chr4 (41962994-41963253)
               

               
               58-229, gnl|Hg17|chr4 (41963241-41963070)
               

               
               58-229, gnl|loxAfr1|scaffold_4339 (19583-19843)
               

               
               58-229, gnl|mm7|chr5 (66755579-66755838)
               

               
               58-229, gnl|Mm7|chr5 (66755826-66755655)
               

               
               58-229, gnl|monDom2|scaffold_26 (7536054-7536313)
               

               
               58-229, gnl|oryCun1|scaffold_213408 (50159-49900)
               

               
               58-229, gnl|panTro1|chr3 (44649341-44649600)
               

               
               58-229, gnl|rheMac2|chr5 (37180834-37181093)
               

               
               58-229, gnl|rn3|chr14 (43389141-43388882)
               

               
               58-229, gnl|tetNig1|chr1 (5203175-5203422)
               

               
               58-229, gnl|xenTro1|scaffold_84 (1033441-1033182)

	58-229, gnl\|bosTau2\|chr6 (32175957-32175786)
	58-229, gnl\|canFam2\|chr13 (42211070-42211329)
	58-229, gnl\|danRer3\|chr5 (17212904-17213152)
	58-229, gnl\|dasNov1\|scaffold_30564 (1753-1494)
	58-229, gnl\|echTel1\|scaffold_306808 (3904-3644)
	58-229, gnl\|fr1\|chrUn (167340056-167340313)
	58-229, gnl\|galGal2\|chr4 (68789284-68789025)
	58-229, gnl\|hg17\|chr4 (41962994-41963253)
	58-229, gnl\|Hg17\|chr4 (41963241-41963070)
	58-229, gnl\|loxAfr1\|scaffold_4339 (19583-19843)
	58-229, gnl\|mm7\|chr5 (66755579-66755838)
	58-229, gnl\|Mm7\|chr5 (66755826-66755655)
	58-229, gnl\|monDom2\|scaffold_26 (7536054-7536313)
	58-229, gnl\|oryCun1\|scaffold_213408 (50159-49900)
	58-229, gnl\|panTro1\|chr3 (44649341-44649600)
	58-229, gnl\|rheMac2\|chr5 (37180834-37181093)
	58-229, gnl\|rn3\|chr14 (43389141-43388882)
	58-229, gnl\|tetNig1\|chr1 (5203175-5203422)
	58-229, gnl\|xenTro1\|scaffold_84 (1033441-1033182)