Non-Coding RNA Search

Ss1.1-Pig3-SRG8025F17.5

Sequence:


               
               GCGCCTCTGCTCCACCATTGGAACGACGTAGCTTCATGGGAAACTCAGATATTCAGTCCT
TGGATAACTACAGTACTACTTCATCTCATTCTGGTGGTCCACCTCAGCCTTCTGCCTTTT
CCGAGTCATTTCCCAGTTCGGTAGCTGGATACGGAGACATTTACCTCAATACAGGTCCCA
TGGTGTTTAGTGGAGACAAGGACCATAGATTTGAATATAGCCATGGCCCCATTGCAGTGC
TGGCAAACAGCAGTGACCCTTCCACAGGGCCAGAGAGTACTCATCCTTTGCCAGCAAAGA
TGCACAACTATAACTATGGTGGTTCCTTACAGGAAACCCCAGGTGGCCATGGCCTCATGC
ATGGACAGACCTGGACTTCTCCTGCCCAAGGACCTGGGTATTCACAAGGATACAGGGGAC
ACATTATCACATCATCTGGCAGAGGTCGAGGCAGAGGGTTACCATACTGAGTATCTGTTT
TTCCTCAGGCACATCATTTTTATCTGGAAAGACTTTTCTAGCTGCAATTTAAAGCAGCAA
TCCAAGAGACTTGAATAATATTAATTCAACAACAGCTTTATTTTTATGTGGAAAAGGGTC
TTGCATACAATAGTTAAAAAAAAGACAAAAAAAAAACCTTTGCTTAAATTCATGCTGTTC
TAAAACCTAGATCTATTGATTGTACATCTTCACAAATTCTAGTTAACAATTTTATTTTGT
ATTCTTGCAGTTTTAAGTGGATGCTAATCTTAGGGACATAAAAGTCTTTTATGGCCCTCT
TGCAGATCTTCTGAACTATGCACATTTGTGCTTTTTTGTAAGTTTGGACCAACTTTTATG
TAACAACCACCCGGCCCCTCCCCCCTCCAGTTTTACAACAATCAGAAAGGGCACTGATTT
ATTTGGTATTTTTCTTTTTACAAAGCTACCTTTAGTCAAAGGTCACTGTCAGTCTTTGCA
CCTGCTTTCAGTGTTATTGTGAAAGGTGTACTTTGTGCTCATTTCAGAAAATAAAACACA
ACTTTCTCTTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGCCTCTGCTCCACCATTGGAACGACGTAGCTTCATGGGAAACTCAGATATTCAGTCCT
TGGATAACTACAGTACTACTTCATCTCATTCTGGTGGTCCACCTCAGCCTTCTGCCTTTT
CCGAGTCATTTCCCAGTTCGGTAGCTGGATACGGAGACATTTACCTCAATACAGGTCCCA
TGGTGTTTAGTGGAGACAAGGACCATAGATTTGAATATAGCCATGGCCCCATTGCAGTGC
TGGCAAACAGCAGTGACCCTTCCACAGGGCCAGAGAGTACTCATCCTTTGCCAGCAAAGA
TGCACAACTATAACTATGGTGGTTCCTTACAGGAAACCCCAGGTGGCCATGGCCTCATGC
ATGGACAGACCTGGACTTCTCCTGCCCAAGGACCTGGGTATTCACAAGGATACAGGGGAC
ACATTATCACATCATCTGGCAGAGGTCGAGGCAGAGGGTTACCATACTGAGTATCTGTTT
TTCCTCAGGCACATCATTTTTATCTGGAAAGACTTTTCTAGCTGCAATTTAAAGCAGCAA
TCCAAGAGACTTGAATAATATTAATTCAACAACAGCTTTATTTTTATGTGGAAAAGGGTC
TTGCATACAATAGTTAAAAAAAAGACAAAAAAAAAACCTTTGCTTAAATTCATGCTGTTC
TAAAACCTAGATCTATTGATTGTACATCTTCACAAATTCTAGTTAACAATTTTATTTTGT
ATTCTTGCAGTTTTAAGTGGATGCTAATCTTAGGGACATAAAAGTCTTTTATGGCCCTCT
TGCAGATCTTCTGAACTATGCACATTTGTGCTTTTTTGTAAGTTTGGACCAACTTTTATG
TAACAACCACCCGGCCCCTCCCCCCTCCAGTTTTACAACAATCAGAAAGGGCACTGATTT
ATTTGGTATTTTTCTTTTTACAAAGCTACCTTTAGTCAAAGGTCACTGTCAGTCTTTGCA
CCTGCTTTCAGTGTTATTGTGAAAGGTGTACTTTGTGCTCATTTCAGAAAATAAAACACA
ACTTTCTCTTGA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|12844133|dbj|BAB26250.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|12844133|dbj|BAB26250.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               158-357, - strand, RNAz p=0.984807
               

               
               715-1032, - strand, RNAz p=0.939841

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               158-357, - strand, RNAz p=0.984807
               

               
               715-1032, - strand, RNAz p=0.939841

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1032, gnl|bosTau2|chr4 (47654121-47653089)
               

               
               1-1032, gnl|Hg17|chr7 (39907350-39908371)
               

               
               1-1032, gnl|Mm7|chr13 (17080305-17079254)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1032, gnl|bosTau2|chr4 (47654121-47653089)
               

               
               1-1032, gnl|Hg17|chr7 (39907350-39908371)
               

               
               1-1032, gnl|Mm7|chr13 (17080305-17079254)

	158-357, - strand, RNAz p=0.984807
	715-1032, - strand, RNAz p=0.939841

	1-1032, gnl\|bosTau2\|chr4 (47654121-47653089)
	1-1032, gnl\|Hg17\|chr7 (39907350-39908371)
	1-1032, gnl\|Mm7\|chr13 (17080305-17079254)