Non-Coding RNA Search

Ss1.1-Pig3-SRG8025G21.3

Sequence:


               
               ATGAGTGGTGGTGATTTTAAAAAATGATTTCTTGCTAATGATAATTCTTGAACCTACCCT
ATATTTTCACTCTTGGACTGCTCTTAGTCTGTGAAATAGAATAGCTGGTTTTATCCTAAT
GCTTGAAATGAACAGTGGCTGCTCATTACGACTACAATTAAAATGTATAGGCTGGTGTGA
TGATTGTGTTTCCAGGTTGGACTTTCTTTCAGTGTATCTCACTGTGTTTATCTGGTGTTT
GCTGTTGTGGGTTAGCTTTGGATTTGCCCTCATGAGTGATGGGTCTTGGAAGCTGTGTGT
TTCCTCTTGGGTGGTAAGAATCCTGCTTTGCTCCAGACGGATAGCTCATATGGAGGGATG
TGGGTAATGAGAGACGCCCAACCTCCCTACCCCCCAGTAGACTTATGGTGCTCTGTGGAT
TCCCCCTTTACTGGGGACAGTTCCTAACATTGTCAAAAACACAATTATGCCTGGTTCAGC
CTTCAACTTGAGAAGAGCTGTCTTCCCTGGCTTCTGGGAACCATAGGCTGAAAAAAAAAT
TGGATGCCACAAACAAAATACCTTGAACTTCAGGACAAGTGGAGATGTGAGTGACTTGGA
GAGGCTCTTGAATATTTCCACTATTTATTGACGTAGGTTTCTTTTTTGGTTGGCATGTCC
TAAGTCCTTGCTAACAACCTCCAAAAAGTTGAGAGGATTTTTGTTTTTTCAAACTTAAAA
AAAAGTATTCAGATAATAACTCACACCTGTCTTACATTTTCTTGGCTCCTTGATCTCATT
TTAGCCTTATAACACCATGAGGCAATTAGGGAAAGGTGTCATCCTCATGTGACAGTTAAA
TGGTGGTGGCAGTTAAGATCCAGCTTAAATAAGGTGGAGTCTGAAGTTAAGTGTTTTGAA
TTTTGGTTCCTTGTCACTTACTAGCTGTGTGACACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGAGTGGTGGTGATTTTAAAAAATGATTTCTTGCTAATGATAATTCTTGAACCTACCCT
ATATTTTCACTCTTGGACTGCTCTTAGTCTGTGAAATAGAATAGCTGGTTTTATCCTAAT
GCTTGAAATGAACAGTGGCTGCTCATTACGACTACAATTAAAATGTATAGGCTGGTGTGA
TGATTGTGTTTCCAGGTTGGACTTTCTTTCAGTGTATCTCACTGTGTTTATCTGGTGTTT
GCTGTTGTGGGTTAGCTTTGGATTTGCCCTCATGAGTGATGGGTCTTGGAAGCTGTGTGT
TTCCTCTTGGGTGGTAAGAATCCTGCTTTGCTCCAGACGGATAGCTCATATGGAGGGATG
TGGGTAATGAGAGACGCCCAACCTCCCTACCCCCCAGTAGACTTATGGTGCTCTGTGGAT
TCCCCCTTTACTGGGGACAGTTCCTAACATTGTCAAAAACACAATTATGCCTGGTTCAGC
CTTCAACTTGAGAAGAGCTGTCTTCCCTGGCTTCTGGGAACCATAGGCTGAAAAAAAAAT
TGGATGCCACAAACAAAATACCTTGAACTTCAGGACAAGTGGAGATGTGAGTGACTTGGA
GAGGCTCTTGAATATTTCCACTATTTATTGACGTAGGTTTCTTTTTTGGTTGGCATGTCC
TAAGTCCTTGCTAACAACCTCCAAAAAGTTGAGAGGATTTTTGTTTTTTCAAACTTAAAA
AAAAGTATTCAGATAATAACTCACACCTGTCTTACATTTTCTTGGCTCCTTGATCTCATT
TTAGCCTTATAACACCATGAGGCAATTAGGGAAAGGTGTCATCCTCATGTGACAGTTAAA
TGGTGGTGGCAGTTAAGATCCAGCTTAAATAAGGTGGAGTCTGAAGTTAAGTGTTTTGAA
TTTTGGTTCCTTGTCACTTACTAGCTGTGTGACACT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               739-936, + strand, RNAz p=0.974452

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               739-936, + strand, RNAz p=0.974452

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-936, gnl|bosTau2|chr22 (26979916-26978964)
               

               
               1-936, gnl|Hg17|chr3 (65949503-65948686)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-936, gnl|bosTau2|chr22 (26979916-26978964)
               

               
               1-936, gnl|Hg17|chr3 (65949503-65948686)

	1-936, gnl\|bosTau2\|chr22 (26979916-26978964)
	1-936, gnl\|Hg17\|chr3 (65949503-65948686)