Non-Coding RNA Search

Ss1.1-Pig3-SRG8025H11.5

Sequence:


               
               GGGTGGTAGAATTTGCTTCCCTGATCAGCTAGCATTTGTTTTTTAGCAAAGCCCTTCAAA
AGGTTAAATTAAAGAGAGAGATTTTTGTTGAAGACATTCTTCTTTCCCATAATTAGCTGC
AGGGCTGCCTATGTTGAATTGATCAAACATTTACAATTATATGCCCTTTAATATCTTACT
GGAGGCCTGTCAGTGATTTTTGAAAATGAGAGCTTCAGCAGTAACTCGAGGTGTTAAGCA
TTGTTTTTCTTGGAGTTTCATGCTCTCTTCTGCTTGGATTTAACTGAGTGTTTGAGTGAA
GGGTGTACATGTGAGGTGTGTGTGCTTACATTTATTTCTAGAACAACAGGGTAGCAAGTG
GCATTTAATCCACTAAGGGGACGTTTGGGCTGCATTCACTTGCCAGTCACACAAAAAGCA
TTGATTGAGCATCTTCTCTGTGGCTGGTACTTATACACATAGAAATAAGATGGGGTTCTG
CCCTTAGTGGGGTCCACATTATAACTGAGGAAATGTCCTCATGAGTTCAGTTAGAATCCA
TTGTGTTAAATGCCCAGGGTTCTCTGGGAGCATAGAGATGAACAGTCATTTCAGCTCTTT
AGTCAGGAAAACACTTCTCATTGGAAGTGACCTTGGTTTCTCCTCTGGGCTTTCAAAGCA
TTTTTTGTTTTCACTTGCATCTAATTCTTGCTTAGACTTGAAACTGTTTGAGGGCAGGGC
TAATGTATTTCTTACTCCTTTTGTCTCCTTAGTTCCTCACACCTTAGGTATTAAGTGCGT
ATTTGAAAGTTAGATTTTAATGATGCAGACTTCCAGGTAATCTTAAAATGAGGTTTTGAA
GGTGGGAACAGATTTTTCTTTGCCACATCTTCCTCTTTTTCTTCCTCATCTTTCAAAATT
GCAAAGCCTCTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGTGGTAGAATTTGCTTCCCTGATCAGCTAGCATTTGTTTTTTAGCAAAGCCCTTCAAA
AGGTTAAATTAAAGAGAGAGATTTTTGTTGAAGACATTCTTCTTTCCCATAATTAGCTGC
AGGGCTGCCTATGTTGAATTGATCAAACATTTACAATTATATGCCCTTTAATATCTTACT
GGAGGCCTGTCAGTGATTTTTGAAAATGAGAGCTTCAGCAGTAACTCGAGGTGTTAAGCA
TTGTTTTTCTTGGAGTTTCATGCTCTCTTCTGCTTGGATTTAACTGAGTGTTTGAGTGAA
GGGTGTACATGTGAGGTGTGTGTGCTTACATTTATTTCTAGAACAACAGGGTAGCAAGTG
GCATTTAATCCACTAAGGGGACGTTTGGGCTGCATTCACTTGCCAGTCACACAAAAAGCA
TTGATTGAGCATCTTCTCTGTGGCTGGTACTTATACACATAGAAATAAGATGGGGTTCTG
CCCTTAGTGGGGTCCACATTATAACTGAGGAAATGTCCTCATGAGTTCAGTTAGAATCCA
TTGTGTTAAATGCCCAGGGTTCTCTGGGAGCATAGAGATGAACAGTCATTTCAGCTCTTT
AGTCAGGAAAACACTTCTCATTGGAAGTGACCTTGGTTTCTCCTCTGGGCTTTCAAAGCA
TTTTTTGTTTTCACTTGCATCTAATTCTTGCTTAGACTTGAAACTGTTTGAGGGCAGGGC
TAATGTATTTCTTACTCCTTTTGTCTCCTTAGTTCCTCACACCTTAGGTATTAAGTGCGT
ATTTGAAAGTTAGATTTTAATGATGCAGACTTCCAGGTAATCTTAAAATGAGGTTTTGAA
GGTGGGAACAGATTTTTCTTTGCCACATCTTCCTCTTTTTCTTCCTCATCTTTCAAAATT
GCAAAGCCTCTA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               652-764, - strand, RNAz p=0.523169

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               652-764, - strand, RNAz p=0.523169

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-379, gnl|bosTau2|chr12 (26656068-26655697)
               

               
               1-379, gnl|Hg17|chr13 (75238183-75238567)
               

               
               1-379, gnl|Mm7|chr14 (96262384-96262920)
               


               
               441-880, gnl|bosTau2|chr12 (26655426-26654985)
               

               
               441-880, gnl|Hg17|chr13 (75238637-75239085)
               

               
               441-880, gnl|Mm7|chr14 (96263182-96263634)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-379, gnl|bosTau2|chr12 (26656068-26655697)
               

               
               1-379, gnl|Hg17|chr13 (75238183-75238567)
               

               
               1-379, gnl|Mm7|chr14 (96262384-96262920)
               


               
               441-880, gnl|bosTau2|chr12 (26655426-26654985)
               

               
               441-880, gnl|Hg17|chr13 (75238637-75239085)
               

               
               441-880, gnl|Mm7|chr14 (96263182-96263634)

	1-379, gnl\|bosTau2\|chr12 (26656068-26655697)
	1-379, gnl\|Hg17\|chr13 (75238183-75238567)
	1-379, gnl\|Mm7\|chr14 (96262384-96262920)

	441-880, gnl\|bosTau2\|chr12 (26655426-26654985)
	441-880, gnl\|Hg17\|chr13 (75238637-75239085)
	441-880, gnl\|Mm7\|chr14 (96263182-96263634)