Non-Coding RNA Search

Ss1.1-Pig3-SRG8025H20.5

Sequence:


               
               TGATCTTGAGTGGCTGCGAGGCATTGGATGGGTGCCCCTTGGCTCTGTGGAGGTTGAGAA
GGTGAAGAGGGCTGGAGAAATCCTGAGTGAGAGGAAGTACCGCCAACCTGCAGACCAGCT
CAAGTTCACATGCATTACAGATACCCCAGAGATTGTCCTGGCAAAGAATAATGCCCTGAC
CATGAGCAAGCATTTGTATACGGAAGCCTGGGATACTGACAAAACCTCCATCCATGTGAT
GCCAGACACCCCAGAAATCTTGCTGGCCAAGAGCAATTCCGCCAACATCAGCCAAAAACT
TTACACCAAGGGATGGGATGAATCAAAGATGAAGGACTATGACCTGAAAGCTGATGCTAT
TTCCATCAAAAGCGCCAAGGCCTCCAGGGACATCGCCAGTGATTACAAATACAAGGAAGC
ATATGAGAAACAGAAAGGCCACCACATTGGAGCCCAGAGTGTTGAAGATGACCCCAAGAT
TATGTGTGCCATCCACGCAGGGAAGATTCAAAGTGAAAGGGAGTACAAGAAGGATTTCCA
GAAGTGGAAGACCAAATTCACCAGCCCGGTGGACATGCTAGGCATCTTGTTGGCCAAGAA
GTGCCAGACTCTGGTCAGTGACATTGATTATCGAAATTACCTGCATCACTGGACATGCTT
ACCCGATCAGAATGACATTATTCAAGCAAGGAAGGCCTACGAACTGCAGAGTGACAATGT
GTACAAAACAGACCTGGAGTGGCTGCGTGGCATCGGCTGGATGCCTGAAGGCTCTGTAGA
AATGAACAGGGTGAAGAATGCTCAAGACCTGGTGAATGAAAGACGCTACAGGACACGCCC
AGAAGCCTTGAAATTCACTTCCGTCGTCGACACGCCAGAGGTTGTCCTGGCAAAGGCCAA
TTCTCTGCAGATGAGTGAGAAACTATATCAAGAAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGATCTTGAGTGGCTGCGAGGCATTGGATGGGTGCCCCTTGGCTCTGTGGAGGTTGAGAA
GGTGAAGAGGGCTGGAGAAATCCTGAGTGAGAGGAAGTACCGCCAACCTGCAGACCAGCT
CAAGTTCACATGCATTACAGATACCCCAGAGATTGTCCTGGCAAAGAATAATGCCCTGAC
CATGAGCAAGCATTTGTATACGGAAGCCTGGGATACTGACAAAACCTCCATCCATGTGAT
GCCAGACACCCCAGAAATCTTGCTGGCCAAGAGCAATTCCGCCAACATCAGCCAAAAACT
TTACACCAAGGGATGGGATGAATCAAAGATGAAGGACTATGACCTGAAAGCTGATGCTAT
TTCCATCAAAAGCGCCAAGGCCTCCAGGGACATCGCCAGTGATTACAAATACAAGGAAGC
ATATGAGAAACAGAAAGGCCACCACATTGGAGCCCAGAGTGTTGAAGATGACCCCAAGAT
TATGTGTGCCATCCACGCAGGGAAGATTCAAAGTGAAAGGGAGTACAAGAAGGATTTCCA
GAAGTGGAAGACCAAATTCACCAGCCCGGTGGACATGCTAGGCATCTTGTTGGCCAAGAA
GTGCCAGACTCTGGTCAGTGACATTGATTATCGAAATTACCTGCATCACTGGACATGCTT
ACCCGATCAGAATGACATTATTCAAGCAAGGAAGGCCTACGAACTGCAGAGTGACAATGT
GTACAAAACAGACCTGGAGTGGCTGCGTGGCATCGGCTGGATGCCTGAAGGCTCTGTAGA
AATGAACAGGGTGAAGAATGCTCAAGACCTGGTGAATGAAAGACGCTACAGGACACGCCC
AGAAGCCTTGAAATTCACTTCCGTCGTCGACACGCCAGAGGTTGTCCTGGCAAAGGCCAA
TTCTCTGCAGATGAGTGAGAAACTATATCAAGAAGC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               483-602, + strand, RNAz p=0.734185

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               483-602, + strand, RNAz p=0.734185

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               404-714, gnl|bosTau2|chr2 (29685377-29685687)
               

               
               404-714, gnl|Hg17|chr2 (152292142-152291832)
               

               
               404-714, gnl|Mm7|chr2 (52234866-52234556)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               404-714, gnl|bosTau2|chr2 (29685377-29685687)
               

               
               404-714, gnl|Hg17|chr2 (152292142-152291832)
               

               
               404-714, gnl|Mm7|chr2 (52234866-52234556)

	404-714, gnl\|bosTau2\|chr2 (29685377-29685687)
	404-714, gnl\|Hg17\|chr2 (152292142-152291832)
	404-714, gnl\|Mm7\|chr2 (52234866-52234556)