Non-Coding RNA Search

Ss1.1-Pig3-SRG8025H22.5

Sequence:


               
               GGTTTCTCCCTTGAACAGTGTAAATTCAAGCACTGGATTCCATTGTAAATCGGATCCTGT
GGGTCCCCCTGGGAGGAGCCCCTTGTGTGGGGTGGTCCCCTTGGGTAGGGAGGGGGTGGG
GACACAGGAGCCGGAACTCATCGGCCTCTGCGTTCCATGGGCGCACGGCCACTCGGTAAG
AGCGGCGAGCACTTCCTGCTAATGCCACGGCATCTCTGCTCCAGTCGCCTCCCGAGAACA
CCAGCCCATCTCTACAACAGGCTGCGGCCCATCCGGACCCCCAGACCAGCACCGAGAAGC
CACGCTGTCCCAGGGCCCCCTCCTCTTCCTCCTGAGCAGGGAGAAGCGGCACTTTGTCAC
TTGGGTGAATCGGCAGCCTCTGCTTTTTTCCAGAGAACCGAAAATCCTGGCTTAATGAAG
TGGCAGTATTTTTGTTTGCACTCACTACACACACACACACACACACACACACCCCCCCAC
ACCCTGCCCCATGTAGAAACCTCCACAGATTCAAACAAACTTTATTCTTGTACAATTTTA
ATCAGTTCTTACTGTAGAATCTGGAGTCAATGCTCTAATTTTTTTTTATAAGTAATATAT
ATTATGTATATGAAATGTGTATCTATAGTATGTCTGGAGACAGACGAGACTGCACACTGA
AATGCGGAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTTTCTCCCTTGAACAGTGTAAATTCAAGCACTGGATTCCATTGTAAATCGGATCCTGT
GGGTCCCCCTGGGAGGAGCCCCTTGTGTGGGGTGGTCCCCTTGGGTAGGGAGGGGGTGGG
GACACAGGAGCCGGAACTCATCGGCCTCTGCGTTCCATGGGCGCACGGCCACTCGGTAAG
AGCGGCGAGCACTTCCTGCTAATGCCACGGCATCTCTGCTCCAGTCGCCTCCCGAGAACA
CCAGCCCATCTCTACAACAGGCTGCGGCCCATCCGGACCCCCAGACCAGCACCGAGAAGC
CACGCTGTCCCAGGGCCCCCTCCTCTTCCTCCTGAGCAGGGAGAAGCGGCACTTTGTCAC
TTGGGTGAATCGGCAGCCTCTGCTTTTTTCCAGAGAACCGAAAATCCTGGCTTAATGAAG
TGGCAGTATTTTTGTTTGCACTCACTACACACACACACACACACACACACACCCCCCCAC
ACCCTGCCCCATGTAGAAACCTCCACAGATTCAAACAAACTTTATTCTTGTACAATTTTA
ATCAGTTCTTACTGTAGAATCTGGAGTCAATGCTCTAATTTTTTTTTATAAGTAATATAT
ATTATGTATATGAAATGTGTATCTATAGTATGTCTGGAGACAGACGAGACTGCACACTGA
AATGCGGAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               10-106, + strand, RNAz p=0.837379
               

               
               556-671, + strand, RNAz p=0.594153

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               10-106, + strand, RNAz p=0.837379
               

               
               556-671, + strand, RNAz p=0.594153

Homologous human UTR: 2 entry(ies)

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Homologous human UTR: 2 entry(ies)

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               5' of AJ291579, +
               

               
               5' of AJ291579, +

Homologous human UTR: 2 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AJ291579, +
               

               
               5' of AJ291579, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               10-458, gnl|bosTau2|chr23 (30116163-30116615)
               

               
               10-458, gnl|Hg17|chr6 (17869255-17868767)
               

               
               10-458, gnl|Mm7|chr13 (46232852-46232451)
               


               
               478-671, gnl|bosTau2|chr23 (30116605-30116796)
               

               
               478-671, gnl|Hg17|chr6 (17868777-17868582)
               

               
               478-671, gnl|Mm7|chr13 (46232461-46232273)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               10-458, gnl|bosTau2|chr23 (30116163-30116615)
               

               
               10-458, gnl|Hg17|chr6 (17869255-17868767)
               

               
               10-458, gnl|Mm7|chr13 (46232852-46232451)
               


               
               478-671, gnl|bosTau2|chr23 (30116605-30116796)
               

               
               478-671, gnl|Hg17|chr6 (17868777-17868582)
               

               
               478-671, gnl|Mm7|chr13 (46232461-46232273)

	10-106, + strand, RNAz p=0.837379
	556-671, + strand, RNAz p=0.594153

	10-458, gnl\|bosTau2\|chr23 (30116163-30116615)
	10-458, gnl\|Hg17\|chr6 (17869255-17868767)
	10-458, gnl\|Mm7\|chr13 (46232852-46232451)

	478-671, gnl\|bosTau2\|chr23 (30116605-30116796)
	478-671, gnl\|Hg17\|chr6 (17868777-17868582)
	478-671, gnl\|Mm7\|chr13 (46232461-46232273)