Non-Coding RNA Search

Ss1.1-Pig3-SRG8025J16.3

Sequence:


               
               GTCAGTTCCTCCTTTCGTCCACCCCGCCTACCTTCTGTACTTCTGTCTCCACTTTCTTGG
GATTGGTGGGGAATAAAAGGGCGCACACAGTGAAGTCAGGTCATGAAAGCACCAGGGGAC
TTTTTTTGCGGGGGCGGAGGTGAAAAGAAAGGAGAACGGTGAACAGGCCTTTGGCTCCAG
TAAGAATGGCTCCAGCCAGAGGCAAAGGCAGCCACGGTGACTCTGCCTCAAAGTGAAAGC
GAAAGCCAAGTAGGCGGAGAGAACAGAAAGGGCCAGGCTTCCCAGAAAGCTGGTTCTGGG
TAAAAAAGGAGAACAGAGGGACGTTGGCCAGCGTGGGAAGCGGGAAGTTTACCCCTTGAT
GATTGGACAGTTGAGCAGCCCCCAAGCAAGTATAGAAGTAACTTTCTGGACAAGAGGGTG
CTCACCCCAGCCTGTTCCCTGCAGTAGAAAGGCAGTGGCGGGCAGTGGATGTGGTCCTGG
ACTGCTTCCTGATGGAGGAAGGTGGGCACCGTGGAGCTTTTGCCAGCAGTGGGAACAAGA
TGAAGGCCTTGTTGGTGCTGAAGCAGGCGCCAGTGCCAGATGATGGCTCCCTGGAAGGCC
TCACGGATTTCCAAGTGGGCACGCTGGCCAAGGACGACCCGCCCATTACCTTCGAGGCCT
CAGTGGAGTTCCAGGTGACAACACAGACCCCGTCCTTGAATCTTCTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCAGTTCCTCCTTTCGTCCACCCCGCCTACCTTCTGTACTTCTGTCTCCACTTTCTTGG
GATTGGTGGGGAATAAAAGGGCGCACACAGTGAAGTCAGGTCATGAAAGCACCAGGGGAC
TTTTTTTGCGGGGGCGGAGGTGAAAAGAAAGGAGAACGGTGAACAGGCCTTTGGCTCCAG
TAAGAATGGCTCCAGCCAGAGGCAAAGGCAGCCACGGTGACTCTGCCTCAAAGTGAAAGC
GAAAGCCAAGTAGGCGGAGAGAACAGAAAGGGCCAGGCTTCCCAGAAAGCTGGTTCTGGG
TAAAAAAGGAGAACAGAGGGACGTTGGCCAGCGTGGGAAGCGGGAAGTTTACCCCTTGAT
GATTGGACAGTTGAGCAGCCCCCAAGCAAGTATAGAAGTAACTTTCTGGACAAGAGGGTG
CTCACCCCAGCCTGTTCCCTGCAGTAGAAAGGCAGTGGCGGGCAGTGGATGTGGTCCTGG
ACTGCTTCCTGATGGAGGAAGGTGGGCACCGTGGAGCTTTTGCCAGCAGTGGGAACAAGA
TGAAGGCCTTGTTGGTGCTGAAGCAGGCGCCAGTGCCAGATGATGGCTCCCTGGAAGGCC
TCACGGATTTCCAAGTGGGCACGCTGGCCAAGGACGACCCGCCCATTACCTTCGAGGCCT
CAGTGGAGTTCCAGGTGACAACACAGACCCCGTCCTTGAATCTTCTGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61866414|ref|XP_590050.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61866414|ref|XP_590050.1|

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               170-272, - strand, RNAz p=0.958533
               

               
               412-630, + strand, RNAz p=0.869806
               

               
               526-645, - strand, RNAz p=0.738743

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               170-272, - strand, RNAz p=0.958533
               

               
               412-630, + strand, RNAz p=0.869806
               

               
               526-645, - strand, RNAz p=0.738743

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               2-293, gnl|bosTau2|chr5 (60691586-60691297)
               

               
               2-293, gnl|canFam2|chr27 (41562510-41562199)
               

               
               2-293, gnl|hg17|chr12 (6431261-6431519)
               

               
               2-293, gnl|Hg17|chr12 (6431315-6431578)
               

               
               2-293, gnl|mm7|chr6 (125258270-125258039)
               

               
               2-293, gnl|oryCun1|scaffold_199228 (7382-7675)
               

               
               2-293, gnl|panTro1|chr10 (6965270-6965528)
               

               
               2-293, gnl|rheMac2|chr11 (6605750-6606007)
               

               
               2-293, gnl|rn3|chr4 (161594971-161594744)
               


               
               344-663, gnl|bosTau2|chr5 (60690697-60690380)
               

               
               344-663, gnl|canFam2|chr27 (41561794-41561045)
               

               
               344-663, gnl|hg17|chr12 (6431885-6432646)
               

               
               344-663, gnl|Hg17|chr12 (6432384-6432724)
               

               
               344-663, gnl|mm7|chr6 (125257706-125256938)
               

               
               344-663, gnl|Mm7|chr6 (125257192-125256858)
               

               
               344-663, gnl|oryCun1|scaffold_199228 (8063-8835)
               

               
               344-663, gnl|panTro1|chr10 (6965894-6966655)
               

               
               344-663, gnl|rheMac2|chr11 (6606358-6607119)
               

               
               344-663, gnl|rn3|chr4 (161594417-161593690)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-293, gnl|bosTau2|chr5 (60691586-60691297)
               

               
               2-293, gnl|canFam2|chr27 (41562510-41562199)
               

               
               2-293, gnl|hg17|chr12 (6431261-6431519)
               

               
               2-293, gnl|Hg17|chr12 (6431315-6431578)
               

               
               2-293, gnl|mm7|chr6 (125258270-125258039)
               

               
               2-293, gnl|oryCun1|scaffold_199228 (7382-7675)
               

               
               2-293, gnl|panTro1|chr10 (6965270-6965528)
               

               
               2-293, gnl|rheMac2|chr11 (6605750-6606007)
               

               
               2-293, gnl|rn3|chr4 (161594971-161594744)
               


               
               344-663, gnl|bosTau2|chr5 (60690697-60690380)
               

               
               344-663, gnl|canFam2|chr27 (41561794-41561045)
               

               
               344-663, gnl|hg17|chr12 (6431885-6432646)
               

               
               344-663, gnl|Hg17|chr12 (6432384-6432724)
               

               
               344-663, gnl|mm7|chr6 (125257706-125256938)
               

               
               344-663, gnl|Mm7|chr6 (125257192-125256858)
               

               
               344-663, gnl|oryCun1|scaffold_199228 (8063-8835)
               

               
               344-663, gnl|panTro1|chr10 (6965894-6966655)
               

               
               344-663, gnl|rheMac2|chr11 (6606358-6607119)
               

               
               344-663, gnl|rn3|chr4 (161594417-161593690)

	170-272, - strand, RNAz p=0.958533
	412-630, + strand, RNAz p=0.869806
	526-645, - strand, RNAz p=0.738743

	2-293, gnl\|bosTau2\|chr5 (60691586-60691297)
	2-293, gnl\|canFam2\|chr27 (41562510-41562199)
	2-293, gnl\|hg17\|chr12 (6431261-6431519)
	2-293, gnl\|Hg17\|chr12 (6431315-6431578)
	2-293, gnl\|mm7\|chr6 (125258270-125258039)
	2-293, gnl\|oryCun1\|scaffold_199228 (7382-7675)
	2-293, gnl\|panTro1\|chr10 (6965270-6965528)
	2-293, gnl\|rheMac2\|chr11 (6605750-6606007)
	2-293, gnl\|rn3\|chr4 (161594971-161594744)

	344-663, gnl\|bosTau2\|chr5 (60690697-60690380)
	344-663, gnl\|canFam2\|chr27 (41561794-41561045)
	344-663, gnl\|hg17\|chr12 (6431885-6432646)
	344-663, gnl\|Hg17\|chr12 (6432384-6432724)
	344-663, gnl\|mm7\|chr6 (125257706-125256938)
	344-663, gnl\|Mm7\|chr6 (125257192-125256858)
	344-663, gnl\|oryCun1\|scaffold_199228 (8063-8835)
	344-663, gnl\|panTro1\|chr10 (6965894-6966655)
	344-663, gnl\|rheMac2\|chr11 (6606358-6607119)
	344-663, gnl\|rn3\|chr4 (161594417-161593690)