Ss1.1-Pig3-SRG8025K08.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CACGGAAGTGCTATTGTCACACCTCAACTACCTCAGGGAAAGTTCACTGTTGGCCTATAA CACAACCTCCCACACGGACCCATCCCCACGGCTGAATGTCAAAGAAGTTTATAACCAGAT GACGGCCAGACAATTCCGTGGAGACCCTTCCTATGACTCGGTCAGGAGAGGAGGATGGGG CAACAACATGAATTCTGGCCTCAACAAAAGCCCCCCTCTTGCAGGAGCACAGACCATGAG TAAGAATACTGAACAGCGGCCCCAGCCAGATCCCTATCAGATCCTGGGCCCGACCAGCAG TCGCCTAGCCAATCCCGGGAGTGGCCAGATCCAGCTGTGGCAGTTCCTCCTGGAGCTACT CTCGGACAGCGCCAACGCCAGCTGCATCACCTGGGAAGGCACCAACGGGGAGTTCAAAAT GACGGACCCCGACGAGGTGGCCAGGCGCTGGGGGGAGCGGAAGAGCAAACCCAACATGAA TTATGACAAGCTGAGCCGGGCCCTCCGATACTACTACGATAAAAACATTATGACCAAAGT GCACGGCAAGAGGTATGCCTACAAGTTTGACTTCCACGGCATCGCCCAAGCGCTGCAGCC ACACCCCACCGAGTCGTCCATGTACAAGTACCCTTCTGATATTTCCTACATGCCCTCGTA CCACGCCCAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CACGGAAGTGCTATTGTCACACCTCAACTACCTCAGGGAAAGTTCACTGTTGGCCTATAA CACAACCTCCCACACGGACCCATCCCCACGGCTGAATGTCAAAGAAGTTTATAACCAGAT GACGGCCAGACAATTCCGTGGAGACCCTTCCTATGACTCGGTCAGGAGAGGAGGATGGGG CAACAACATGAATTCTGGCCTCAACAAAAGCCCCCCTCTTGCAGGAGCACAGACCATGAG TAAGAATACTGAACAGCGGCCCCAGCCAGATCCCTATCAGATCCTGGGCCCGACCAGCAG TCGCCTAGCCAATCCCGGGAGTGGCCAGATCCAGCTGTGGCAGTTCCTCCTGGAGCTACT CTCGGACAGCGCCAACGCCAGCTGCATCACCTGGGAAGGCACCAACGGGGAGTTCAAAAT GACGGACCCCGACGAGGTGGCCAGGCGCTGGGGGGAGCGGAAGAGCAAACCCAACATGAA TTATGACAAGCTGAGCCGGGCCCTCCGATACTACTACGATAAAAACATTATGACCAAAGT GCACGGCAAGAGGTATGCCTACAAGTTTGACTTCCACGGCATCGCCCAAGCGCTGCAGCC ACACCCCACCGAGTCGTCCATGTACAAGTACCCTTCTGATATTTCCTACATGCCCTCGTA CCACGCCCAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 552-667, - strand, RNAz p=0.577098 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 552-667, - strand, RNAz p=0.577098 |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 317-669, gnl|bosTau2|chr1 (97925366-97925014) | |
| 317-669, gnl|canFam2|chr31 (35578124-35578454) | |
| 317-669, gnl|danRer3|chrNA (176151452-176151758) | |
| 317-669, gnl|dasNov1|scaffold_209 (145784-146127) | |
| 317-669, gnl|echTel1|scaffold_282214 (21801-21460) | |
| 317-669, gnl|fr1|chrUn (10231737-10231407) | |
| 317-669, gnl|galGal2|chr1 (101290830-101291171) | |
| 317-669, gnl|hg17|chr21 (38677414-38677758) | |
| 317-669, gnl|Hg17|chr21 (38677716-38677364) | |
| 317-669, gnl|loxAfr1|scaffold_2015 (110615-110271) | |
| 317-669, gnl|mm7|chr16 (95667945-95668281) | |
| 317-669, gnl|Mm7|chr16 (95668247-95667895) | |
| 317-669, gnl|monDom2|scaffold_29 (4095626-4095289) | |
| 317-669, gnl|oryCun1|scaffold_211359 (49594-49290) | |
| 317-669, gnl|panTro1|chr22 (38714504-38714848) | |
| 317-669, gnl|rheMac2|chr3 (8254846-8254502) | |
| 317-669, gnl|rn3|chr11 (35712400-35712736) | |
| 317-669, gnl|tetNig1|chrUn_random (14258667-14258361) | |
| 317-669, gnl|xenTro1|scaffold_440 (8648-8980) | |
| 335-516, gnl|bosTau2|chr16 (1495898-1495717) | |
| 335-516, gnl|canFam2|chr38 (5083560-5083814) | |
| 335-516, gnl|danRer3|chr11 (41123559-41123351) | |
| 335-516, gnl|dasNov1|scaffold_25341 (6518-6292) | |
| 335-516, gnl|echTel1|scaffold_230245 (2821-3071) | |
| 335-516, gnl|fr1|chrUn (172978311-172978553) | |
| 335-516, gnl|galGal2|chr26 (802971-803196) | |
| 335-516, gnl|hg17|chr1 (202324458-202324709) | |
| 335-516, gnl|Hg17|chr1 (202324649-202324468) | |
| 335-516, gnl|loxAfr1|scaffold_5895 (30805-31058) | |
| 335-516, gnl|mm7|chr1 (131910068-131909834) | |
| 335-516, gnl|Mm7|chr1 (131909875-131910056) | |
| 335-516, gnl|monDom2|scaffold_13 (7419503-7419763) | |
| 335-516, gnl|oryCun1|scaffold_128399 (619-868) | |
| 335-516, gnl|panTro1|chr1 (185282456-185282707) | |
| 335-516, gnl|rheMac2|chr1 (164791392-164791141) | |
| 335-516, gnl|rn3|chr13 (44911779-44911545) | |
| 335-516, gnl|tetNig1|chr11 (10612607-10612817) | |
| 335-516, gnl|xenTro1|scaffold_19 (3741344-3741572) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 317-669, gnl|bosTau2|chr1 (97925366-97925014) | |
| 317-669, gnl|canFam2|chr31 (35578124-35578454) | |
| 317-669, gnl|danRer3|chrNA (176151452-176151758) | |
| 317-669, gnl|dasNov1|scaffold_209 (145784-146127) | |
| 317-669, gnl|echTel1|scaffold_282214 (21801-21460) | |
| 317-669, gnl|fr1|chrUn (10231737-10231407) | |
| 317-669, gnl|galGal2|chr1 (101290830-101291171) | |
| 317-669, gnl|hg17|chr21 (38677414-38677758) | |
| 317-669, gnl|Hg17|chr21 (38677716-38677364) | |
| 317-669, gnl|loxAfr1|scaffold_2015 (110615-110271) | |
| 317-669, gnl|mm7|chr16 (95667945-95668281) | |
| 317-669, gnl|Mm7|chr16 (95668247-95667895) | |
| 317-669, gnl|monDom2|scaffold_29 (4095626-4095289) | |
| 317-669, gnl|oryCun1|scaffold_211359 (49594-49290) | |
| 317-669, gnl|panTro1|chr22 (38714504-38714848) | |
| 317-669, gnl|rheMac2|chr3 (8254846-8254502) | |
| 317-669, gnl|rn3|chr11 (35712400-35712736) | |
| 317-669, gnl|tetNig1|chrUn_random (14258667-14258361) | |
| 317-669, gnl|xenTro1|scaffold_440 (8648-8980) | |
| 335-516, gnl|bosTau2|chr16 (1495898-1495717) | |
| 335-516, gnl|canFam2|chr38 (5083560-5083814) | |
| 335-516, gnl|danRer3|chr11 (41123559-41123351) | |
| 335-516, gnl|dasNov1|scaffold_25341 (6518-6292) | |
| 335-516, gnl|echTel1|scaffold_230245 (2821-3071) | |
| 335-516, gnl|fr1|chrUn (172978311-172978553) | |
| 335-516, gnl|galGal2|chr26 (802971-803196) | |
| 335-516, gnl|hg17|chr1 (202324458-202324709) | |
| 335-516, gnl|Hg17|chr1 (202324649-202324468) | |
| 335-516, gnl|loxAfr1|scaffold_5895 (30805-31058) | |
| 335-516, gnl|mm7|chr1 (131910068-131909834) | |
| 335-516, gnl|Mm7|chr1 (131909875-131910056) | |
| 335-516, gnl|monDom2|scaffold_13 (7419503-7419763) | |
| 335-516, gnl|oryCun1|scaffold_128399 (619-868) | |
| 335-516, gnl|panTro1|chr1 (185282456-185282707) | |
| 335-516, gnl|rheMac2|chr1 (164791392-164791141) | |
| 335-516, gnl|rn3|chr13 (44911779-44911545) | |
| 335-516, gnl|tetNig1|chr11 (10612607-10612817) | |
| 335-516, gnl|xenTro1|scaffold_19 (3741344-3741572) |