Ss1.1-Pig3-SRG8025L08.3
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GAAAACCAAGTCTGTACCCAGGATTGTACCTTTTCACCACGCCTTGCAGACTGGTGCGGC
CTGTGCAGAACCTGGGATTAGGCAGAGAAGAACTAATTGGAACTATGGAACAGATCTTCA
TGAATGTTGCCATCTTTGAGGATGAGGTTTTGGCTGGAGTTACCACCCACCAGGAGCTCT
TGCCTCACAGCCTGCTGAGTGTGATCGCCAACTTCATCCCGTTCTCTGACCACAACCAGA
GTCCGAGGAACATGTACCAATGCCAGATGGGTAAGCAAACCATGGGCTTTCCTCTTCTCA
CGTTTAAAGACCGATCAGATAATAAACTGTATCGGCTTCAGACTCCACAAAGCCCTCTAG
TGAGACCGTACATGTATGATTATTATGACATGGATAACTACCCAATTGGGACAAATGCCA
TTGTTGCTGTCATTTCTTACACTGGCTATGATATGGAAGATGCCATGATTCTGAATAAGG
CCTCTTGGGAGCGAGGCTTTGCCCATGGAAGTGTCTACAAGTCTGAGTTCATAGATCTGT
CTGAAAAAATTAAACAAGGTGATGATAGTCTGGTGTTTGGTGTCAGACCTGGTGACCCAC
GGGTTGCGCAGAAGCTGGATGATGATGGATTGCCATTTGTTGGAGCACAGCTGCAGTATG
GAGATCCGTATTATAGCTACCTGAACCTCAACACCGGGGAAAGCTTTGTGGTGTACTATA
AGAGTAAAGAAAACTGTATTGTGGATAACATCAAGGTGTGCGGTAATGACACCGGAAGTG
GCAGGTTCAAGTGTGTTTGCATCACGATGCGAGTCCCTCGGAACCCAACTATTGGGGATA
AATTTGCCAGTCGTCATGGGCAGAAGGGCATCTTGAGCAGGTTGTGGCCGGTGGAGGACA
TGCCATTCACAGAAGCATACACCTGTGAAGGACCACCACAATCATGGTAATAAACACCAC
CTCCAGAAGTTT
|
Blue-coloured subsequences are predicted RNA structures by RNAz
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GAAAACCAAGTCTGTACCCAGGATTGTACCTTTTCACCACGCCTTGCAGACTGGTGCGGC
CTGTGCAGAACCTGGGATTAGGCAGAGAAGAACTAATTGGAACTATGGAACAGATCTTCA
TGAATGTTGCCATCTTTGAGGATGAGGTTTTGGCTGGAGTTACCACCCACCAGGAGCTCT
TGCCTCACAGCCTGCTGAGTGTGATCGCCAACTTCATCCCGTTCTCTGACCACAACCAGA
GTCCGAGGAACATGTACCAATGCCAGATGGGTAAGCAAACCATGGGCTTTCCTCTTCTCA
CGTTTAAAGACCGATCAGATAATAAACTGTATCGGCTTCAGACTCCACAAAGCCCTCTAG
TGAGACCGTACATGTATGATTATTATGACATGGATAACTACCCAATTGGGACAAATGCCA
TTGTTGCTGTCATTTCTTACACTGGCTATGATATGGAAGATGCCATGATTCTGAATAAGG
CCTCTTGGGAGCGAGGCTTTGCCCATGGAAGTGTCTACAAGTCTGAGTTCATAGATCTGT
CTGAAAAAATTAAACAAGGTGATGATAGTCTGGTGTTTGGTGTCAGACCTGGTGACCCAC
GGGTTGCGCAGAAGCTGGATGATGATGGATTGCCATTTGTTGGAGCACAGCTGCAGTATG
GAGATCCGTATTATAGCTACCTGAACCTCAACACCGGGGAAAGCTTTGTGGTGTACTATA
AGAGTAAAGAAAACTGTATTGTGGATAACATCAAGGTGTGCGGTAATGACACCGGAAGTG
GCAGGTTCAAGTGTGTTTGCATCACGATGCGAGTCCCTCGGAACCCAACTATTGGGGATA
AATTTGCCAGTCGTCATGGGCAGAAGGGCATCTTGAGCAGGTTGTGGCCGGTGGAGGACA
TGCCATTCACAGAAGCATACACCTGTGAAGGACCACCACAATCATGGTAATAAACACCAC
CTCCAGAAGTTT
|
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gi|39644698|gb|AAH04882.4| |
Protein identifier
|
gi|39644698|gb|AAH04882.4| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
111-283, gnl|bosTau2|chr11 (36342143-36342316) |
|
111-283, gnl|canFam2|chr17 (39902441-39902632) |
|
111-283, gnl|dasNov1|scaffold_37363 (10729-10577) |
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111-283, gnl|echTel1|scaffold_65415 (3554-3364) |
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111-283, gnl|fr1|chrUn (190519374-190519538) |
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111-283, gnl|galGal2|chr14 (16228291-16228123) |
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111-283, gnl|hg17|chr2 (113042549-113042744) |
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111-283, gnl|Hg17|chr2 (113042551-113042721) |
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111-283, gnl|loxAfr1|scaffold_102695 (5550-5359) |
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111-283, gnl|mm7|chr2 (128859879-128860068) |
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111-283, gnl|Mm7|chr2 (128859890-128860060) |
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111-283, gnl|monDom2|scaffold_1 (62961489-62961323) |
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111-283, gnl|oryCun1|scaffold_209599 (307-106) |
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111-283, gnl|panTro1|chr12 (116175291-116175486) |
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111-283, gnl|rheMac2|chr13 (111926424-111926619) |
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111-283, gnl|rn3|chr3 (116629821-116630030) |
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111-283, gnl|tetNig1|chrUn_random (50009156-50008985) |
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111-283, gnl|xenTro1|scaffold_658 (133377-133212) |
| |
|
467-722, gnl|bosTau2|chr11 (36346115-36346370) |
|
467-722, gnl|Hg17|chr2 (113047369-113047624) |
|
467-722, gnl|Mm7|chr2 (128864563-128864818) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
111-283, gnl|bosTau2|chr11 (36342143-36342316) |
|
111-283, gnl|canFam2|chr17 (39902441-39902632) |
|
111-283, gnl|dasNov1|scaffold_37363 (10729-10577) |
|
111-283, gnl|echTel1|scaffold_65415 (3554-3364) |
|
111-283, gnl|fr1|chrUn (190519374-190519538) |
|
111-283, gnl|galGal2|chr14 (16228291-16228123) |
|
111-283, gnl|hg17|chr2 (113042549-113042744) |
|
111-283, gnl|Hg17|chr2 (113042551-113042721) |
|
111-283, gnl|loxAfr1|scaffold_102695 (5550-5359) |
|
111-283, gnl|mm7|chr2 (128859879-128860068) |
|
111-283, gnl|Mm7|chr2 (128859890-128860060) |
|
111-283, gnl|monDom2|scaffold_1 (62961489-62961323) |
|
111-283, gnl|oryCun1|scaffold_209599 (307-106) |
|
111-283, gnl|panTro1|chr12 (116175291-116175486) |
|
111-283, gnl|rheMac2|chr13 (111926424-111926619) |
|
111-283, gnl|rn3|chr3 (116629821-116630030) |
|
111-283, gnl|tetNig1|chrUn_random (50009156-50008985) |
|
111-283, gnl|xenTro1|scaffold_658 (133377-133212) |
| |
|
467-722, gnl|bosTau2|chr11 (36346115-36346370) |
|
467-722, gnl|Hg17|chr2 (113047369-113047624) |
|
467-722, gnl|Mm7|chr2 (128864563-128864818) |
