Non-Coding RNA Search

Ss1.1-Pig3-SRG8025P04.3

Sequence:


               
               CGCACCAGCTCGAGATGAAGTCATAGGAATTTTAAAGGCTGAAAAAATGGACTTGGCTTT
GCTGGAAGCTCATTATGGGTTTGTCACTCCAAAAAAGGTGCTAGAAGCTCTTCAGCGAGA
TGCTTTTCAAGCAAAAGCTGACCCTTGGCAGGAGGACATCTATGAGAAACCAATGAATGA
GCTGGACAAAGTTGTGGAAAAACATAAAGAATCTCACAGACGAATCCTGGGACAGCTTTT
AATGGTGGAAAAATCTCACAGGCAAACCATATTAGAGTTGGAGGAAGAAAAGAGAAAACA
TAAAGAATACATGGAGAAGAATGATGAATTCATAAGCTTGCTAGAACAGGAATGTGTAAG
ATTGAAAAGGTTGATTGACCAAGAAACTGAGTCCCAGGAGAAGAAGGAACAAGAAAAAGA
GAAGAAGGTCACTGCCCTGAAAGAGGAGTTGACCAAACTGAAGTCTTTTGCTTTGATGGT
GGTGGATGAACAACAAAGGCTGACAGCACAGCTTGCCCTTCAAAGGCAGAAAATTCAAGA
CCTAACCACAAGTGCAAAGGAAACACATGCTAAACTAGCCCTTGCTGAAGCCAGAGTTCA
GGAAGAAGAGCAGAAGGCAACCAGACTAGAGAACGAACTGCAAACGCAAACCACAAAATT
TCACCAGAACCAAGAAACAATTATGGCAAAGCTCACCAATGAGGATGGCCAAAATCGCCA
GCTTCGACAAAAGCTGGCAGCTCTTAGCCGGCAAATTGATGAGTTAGAAGAGACAAACAG
GTCTTTACGAAAAGCAGAAGAGGAGCTGCAAGATATAAAAGAAAAAGTCAACAAGGGAGA
ATATGGAAACTCCAGTGTCATGGCTGAGGTGGAGGAGCTCAGGAAACGTGTCCTAGAGAT
GGAAGGGAAAGATGAAGAACTCATAAAAATGGAGGAACAGTGCAGAGATCTCAATAAGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCACCAGCTCGAGATGAAGTCATAGGAATTTTAAAGGCTGAAAAAATGGACTTGGCTTT
GCTGGAAGCTCATTATGGGTTTGTCACTCCAAAAAAGGTGCTAGAAGCTCTTCAGCGAGA
TGCTTTTCAAGCAAAAGCTGACCCTTGGCAGGAGGACATCTATGAGAAACCAATGAATGA
GCTGGACAAAGTTGTGGAAAAACATAAAGAATCTCACAGACGAATCCTGGGACAGCTTTT
AATGGTGGAAAAATCTCACAGGCAAACCATATTAGAGTTGGAGGAAGAAAAGAGAAAACA
TAAAGAATACATGGAGAAGAATGATGAATTCATAAGCTTGCTAGAACAGGAATGTGTAAG
ATTGAAAAGGTTGATTGACCAAGAAACTGAGTCCCAGGAGAAGAAGGAACAAGAAAAAGA
GAAGAAGGTCACTGCCCTGAAAGAGGAGTTGACCAAACTGAAGTCTTTTGCTTTGATGGT
GGTGGATGAACAACAAAGGCTGACAGCACAGCTTGCCCTTCAAAGGCAGAAAATTCAAGA
CCTAACCACAAGTGCAAAGGAAACACATGCTAAACTAGCCCTTGCTGAAGCCAGAGTTCA
GGAAGAAGAGCAGAAGGCAACCAGACTAGAGAACGAACTGCAAACGCAAACCACAAAATT
TCACCAGAACCAAGAAACAATTATGGCAAAGCTCACCAATGAGGATGGCCAAAATCGCCA
GCTTCGACAAAAGCTGGCAGCTCTTAGCCGGCAAATTGATGAGTTAGAAGAGACAAACAG
GTCTTTACGAAAAGCAGAAGAGGAGCTGCAAGATATAAAAGAAAAAGTCAACAAGGGAGA
ATATGGAAACTCCAGTGTCATGGCTGAGGTGGAGGAGCTCAGGAAACGTGTCCTAGAGAT
GGAAGGGAAAGATGAAGAACTCATAAAAATGGAGGAACAGTGCAGAGATCTCAATAAGAG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               63-181, + strand, RNAz p=0.687388

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               63-181, + strand, RNAz p=0.687388

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               8-181, gnl|bosTau2|chr1 (23665842-23665669)
               

               
               8-181, gnl|Hg17|chr3 (101131563-101131390)
               

               
               8-181, gnl|Mm7|chr16 (57369074-57369247)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               8-181, gnl|bosTau2|chr1 (23665842-23665669)
               

               
               8-181, gnl|Hg17|chr3 (101131563-101131390)
               

               
               8-181, gnl|Mm7|chr16 (57369074-57369247)

	8-181, gnl\|bosTau2\|chr1 (23665842-23665669)
	8-181, gnl\|Hg17\|chr3 (101131563-101131390)
	8-181, gnl\|Mm7\|chr16 (57369074-57369247)